Merge branch 'master' of github.com:gridap/GridapDistributed.jl into x86_compatibility

Author: JordiManyer

.github/dependabot.yml

@@ -0,0 +1,7 @@
+# https://docs.github.com/github/administering-a-repository/configuration-options-for-dependency-updates
+version: 2
+updates:
+  - package-ecosystem: "github-actions"
+    directory: "/" # Location of package manifests
+    schedule:
+      interval: "monthly"

.github/workflows/ci.yml

@@ -4,69 +4,52 @@ on:
   - pull_request
 jobs:
   SequentialTests:
-    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
+    name: Serial Tests - Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
     runs-on: ${{ matrix.os }}
     strategy:
       fail-fast: false
       matrix:
         version:
-          - '1.9'
+          - '1.10'
         os:
           - ubuntu-latest
         arch:
           - x64
     steps:
-      - uses: actions/checkout@v2
-      - uses: julia-actions/setup-julia@v1
+      - uses: actions/checkout@v5
+      - uses: julia-actions/setup-julia@v2
         with:
           version: ${{ matrix.version }}
           arch: ${{ matrix.arch }}
-      - uses: actions/cache@v1
-        env:
-          cache-name: cache-artifacts
-        with:
-          path: ~/.julia/artifacts
-          key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
-          restore-keys: |
-            ${{ runner.os }}-test-${{ env.cache-name }}-
-            ${{ runner.os }}-test-
-            ${{ runner.os }}-
+      - uses: julia-actions/cache@v2
       - uses: julia-actions/julia-buildpkg@v1
       - run: julia --project=. -e 'using Pkg; Pkg.instantiate()'
       - run: julia --project=. --color=yes --check-bounds=yes test/sequential/runtests.jl
       - uses: julia-actions/julia-processcoverage@v1
-      - uses: codecov/codecov-action@v1
+      - uses: codecov/codecov-action@v5
         with:
-          file: lcov.info
+          verbose: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+          flags: sequential
   MPITests:
-    name: Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
+    name: MPI Tests - Julia ${{ matrix.version }} - ${{ matrix.os }} - ${{ matrix.arch }} - ${{ github.event_name }}
     runs-on: ${{ matrix.os }}
     strategy:
       fail-fast: false
       matrix:
         version:
-          - '1.9'
+          - '1.10'
         os:
           - ubuntu-latest
         arch:
           - x64
     steps:
-      - uses: actions/checkout@v2
-      - uses: actions/cache@v1
-        env:
-          cache-name: cache-artifacts
-        with:
-          path: ~/.julia/artifacts
-          key: ${{ runner.os }}-test-${{ env.cache-name }}-${{ hashFiles('**/Project.toml') }}
-          restore-keys: |
-            ${{ runner.os }}-test-${{ env.cache-name }}-
-            ${{ runner.os }}-test-
-            ${{ runner.os }}-
-      - uses: julia-actions/setup-julia@v1
+      - uses: actions/checkout@v5
+      - uses: julia-actions/cache@v2
+      - uses: julia-actions/setup-julia@v2
         with:
           version: ${{ matrix.version }}
           arch: ${{ matrix.arch }}
-      #- uses: julia-actions/julia-buildpkg@v1
       - run: |
           julia --project=test/TestApp/ -e '
             using Pkg
@@ -75,27 +58,24 @@ jobs:
       - run: cd test/TestApp/compile; ./compile.sh 
       - run: julia --project=test/TestApp/ --color=yes --check-bounds=yes test/mpi/runtests.jl test/TestApp/compile/TestApp.so
       - uses: julia-actions/julia-processcoverage@v1
-      - uses: codecov/codecov-action@v1
+      - uses: codecov/codecov-action@v5
         with:
-          file: lcov.info
+          verbose: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+          flags: mpi
   docs:
     name: Documentation
     runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v2
-      - uses: julia-actions/setup-julia@v1
+      - uses: actions/checkout@v5
+      - uses: julia-actions/setup-julia@v2
         with:
-          version: '1.8'
+          version: '1.10'
       - run: |
           julia --project=docs -e '
             using Pkg
             Pkg.develop(PackageSpec(path=pwd()))
             Pkg.instantiate()'
-#      - run: |
-#          julia --project=docs -e '
-#            using Documenter: doctest
-#            using Gridap
-#            doctest(Gridap)'
       - run: julia --project=docs docs/make.jl
         env:
           GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}

NEWS.md

@@ -5,15 +5,97 @@ All notable changes to this project will be documented in this file.
 The format is based on [Keep a Changelog](https://keepachangelog.com/en/1.0.0/),
 and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html).
 
-## [0.4.0] 2024-04-12
+## [0.4.10] - 2025-09-29
+
+### Added
+
+- Added support for multiple ghost layers on cartesian models. Since PR[#182](https://github.com/gridap/GridapDistributed.jl/pull/182).
+- Added new way of doing AD for MultiField, where partials are computed separately for each field then merged together. Since PR[#176](https://github.com/gridap/GridapDistributed.jl/pull/176).
+
+### Fixed
+
+- Fixed issue [#177](https://github.com/gridap/GridapDistributed.jl/issues/177) and [#170](https://github.com/gridap/GridapDistributed.jl/issues/170). Since PR[#180](https://github.com/gridap/GridapDistributed.jl/pull/180).
+- Fixed issue where calling `Boundary(with_ghost, dmodel)` would return the local processor boundaries (which include the faces at the interface between processors) instead of returning the local part of the global boundary. Since PR[#180](https://github.com/gridap/GridapDistributed.jl/pull/180).
+
+## [0.4.9] - 2025-08-08
+
+### Added
+
+- Added a new framework for redistributing dofs, which is more efficient and flexible than the previous one. Since PR[#179](https://github.com/gridap/GridapDistributed.jl/pull/179).
+
+### Fixed
+
+- Fixed bug when redistributing periodic cartesian models. Since PR[#179](https://github.com/gridap/GridapDistributed.jl/pull/179).
+
+## [0.4.8] - 2025-06-11
+
+### Added
+
+- Added support for Gridap v0.19, with distributed counterparts for the new feaures introduced. This includes support for polytopal meshes, polytopal methods and patch assembly. Since PR[#175](https://github.com/gridap/GridapDistributed.jl/pull/175).
+- Added `MacroDiscreteModel`, which gives a global numbering and classification of the interfaces between processors. Since PR[#175](https://github.com/gridap/GridapDistributed.jl/pull/175).
+
+## [0.4.7] - 2025-03-04
+
+### Added
+
+- Extended support for automatic differentiation to multi-field spaces and skeleton triangulations. Since PR[#169](https://github.com/gridap/GridapDistributed.jl/pull/169).
+
+## [0.4.6] - 2024-12-03
+
+### Added
+
+- Added support for automatic differentiation with ForwardDiff. Since PR[#167](https://github.com/gridap/GridapDistributed.jl/pull/167).
+- Added ConstantFESpaces. Since PR[#166](https://github.com/gridap/GridapDistributed.jl/pull/166).
+
+## [0.4.5] - 2024-10-08
+
+### Fixed
+
+- Fixed bug in `num_cells` in the case where a `DistributedTriangulation` contained ghost cells. Since PR[#160](https://github.com/gridap/GridapDistributed.jl/pull/160).
+- Fixed bug in writevtk when dealing with empty processors. Since PR[#158](https://github.com/gridap/GridapDistributed.jl/pull/158).
+
+## [0.4.4] - 2024-08-14
+
+### Added
+
+- Added kwargs for VTK encoding options. Since PR[#156](https://github.com/gridap/GridapDistributed.jl/pull/156).
+- Reimplemented distributed ZeroMeanFESpaces. Since PR[#155](https://github.com/gridap/GridapDistributed.jl/pull/155).
+
+### Fixed
+
+- Fixed distributed interpolators for Vector-Valued FESpaces. Since PR[#152](https://github.com/gridap/GridapDistributed.jl/pull/152).
+
+## [0.4.3] - 2024-07-18
+
+### Added
+
+- Added distributed refinement of unstructured meshes. Since PR[#149](https://github.com/gridap/GridapDistributed.jl/pull/149).
+
+- Added keyword arguments in the signature of the constructor of `DistributedMeasure`. Since PR[#150](https://github.com/gridap/GridapDistributed.jl/pull/150).
+
+- Added DiracDelta in distributed setting. Since PR[#133](https://github.com/gridap/GridapDistributed.jl/pull/133).
+
+## [0.4.2] - 2024-07-4
+
+### Added
+
+- Added uniform anisotropic refinement of distributed cartesian meshes. Since PR[#148](https://github.com/gridap/GridapDistributed.jl/pull/148).
+
+## [0.4.1] - 2024-06-25
+
+### Fixed
+
+- Fixed bug in block-assembly whenever owners of touched dofs were not present in the local portion of the FESpace. Since PR[#147](https://github.com/gridap/GridapDistributed.jl/pull/147).
+
+## [0.4.0] - 2024-04-12
 
 ### Changed
 
 - `DistributedCellField` now inherits from `CellField`. To accomodate the necessary API, we now save a pointer to the `DistributedTriangulation` where it is defined. This also requires `DistributedSingleFieldFESpace` to save the triangulation. Since PR[#141](https://github.com/gridap/GridapDistributed.jl/pull/141).
 - All the distributed `Multifield` cellfield types are now represented by a `DistributedMultiFieldCellField`. Both `DistributedMultiFieldFEFunction` and `DistributedMultiFieldFEBasis` structs have been removed and replaced with constant aliases, which makes it more consistent with single-field types. Since PR[#141](https://github.com/gridap/GridapDistributed.jl/pull/141).
 - Major refactor of ODE module. Implementation has been significantly simplified, while increasing the capability of the API. All `TransientDistributedObjects` structs have been removed, and replaced by `DistributedTransientObjects = DistributedObjects{TransientObject}`. Full support for EX/IM/IMEX methods. See Gridap's release for details. Since PR[#141](https://github.com/gridap/GridapDistributed.jl/pull/141).
 
-## [0.3.6] 2024-01-28
+## [0.3.6] - 2024-01-28
 
 ### Added
 
@@ -78,7 +160,7 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0
 
 ### Fixed
 
-- Added missing parameter to `allocate_jacobian`, needed after Gridap v0.17.18. Since PR [126](https://github.com/gridap/GridapDistributed.jl/pull/126). 
+- Added missing parameter to `allocate_jacobian`, needed after Gridap v0.17.18. Since PR [126](https://github.com/gridap/GridapDistributed.jl/pull/126).
 
 ## [0.2.8] - 2023-07-31
 

Project.toml

@@ -1,11 +1,13 @@
 name = "GridapDistributed"
 uuid = "f9701e48-63b3-45aa-9a63-9bc6c271f355"
 authors = ["S. Badia <santiago.badia@monash.edu>", "A. F. Martin <alberto.f.martin@anu.edu.au>", "F. Verdugo <f.verdugo.rojano@vu.nl>"]
-version = "0.4.0"
+version = "0.4.10"
 
 [deps]
 BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e"
+CircularArrays = "7a955b69-7140-5f4e-a0ed-f168c5e2e749"
 FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b"
+ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
 Gridap = "56d4f2e9-7ea1-5844-9cf6-b9c51ca7ce8e"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195"
@@ -15,10 +17,12 @@ SparseMatricesCSR = "a0a7dd2c-ebf4-11e9-1f05-cf50bc540ca1"
 WriteVTK = "64499a7a-5c06-52f2-abe2-ccb03c286192"
 
 [compat]
-BlockArrays = "0.16.38"
-FillArrays = "0.8.4,1"
-Gridap = "0.18"
-LinearAlgebra = "1.3"
+BlockArrays = "1"
+CircularArrays = "1.4.0"
+FillArrays = "1"
+ForwardDiff = "0.10, 1"
+Gridap = "0.19.4"
+LinearAlgebra = "1"
 MPI = "0.16, 0.17, 0.18, 0.19, 0.20"
 PartitionedArrays = "0.3.3"
 SparseArrays = "1.3"

README.md

@@ -73,9 +73,11 @@ The domain is discretized using the parallel Cartesian-like mesh generator built
 
 ## Using parallel solvers
 
-`GridapDistributed.jl` is _not_ a library of parallel linear solvers. The linear solver kernel within `GridapDistributed.jl`, defined with the backslash operator `\`, is just a sparse LU solver applied to the global system gathered on a master task (not scalable, but very useful for testing and debug purposes). 
+`GridapDistributed.jl` is _not_ a library of parallel linear solvers. The linear solver kernel within `GridapDistributed.jl`, defined with the backslash operator `\`, is just a sparse LU solver applied to the global system gathered on a master task (not scalable, but very useful for testing and debug purposes).
 
-We provide the full set of scalable linear and nonlinear solvers in the [PETSc](https://petsc.org/release/) library in [`GridapPETSc.jl`](https://github.com/gridap/GridapPETSc.jl). For an example which combines `GridapDistributed` with `GridapPETSc.jl`, we refer to the following [tutorial](https://gridap.github.io/Tutorials/dev/pages/t016_poisson_distributed/). Additional examples can be found in the `test/` folder of `GridapPETSc`. Other linear solver libraries on top of `GridapDistributed` can be developed in the future. 
+We provide the full set of scalable linear and nonlinear solvers in the [PETSc](https://petsc.org/release/) library in [`GridapPETSc.jl`](https://github.com/gridap/GridapPETSc.jl). For an example which combines `GridapDistributed` with `GridapPETSc.jl`, we refer to the following [tutorial](https://gridap.github.io/Tutorials/dev/pages/t016_poisson_distributed/). Additional examples can be found in the `test/` folder of `GridapPETSc`.
+
+We also provide native Julia parallel solvers and preconditioners in [`GridapSolvers.jl`](https://github.com/gridap/GridapSolvers.jl).
 
 ## Partitioned meshes
 

docs/src/Adaptivity.md

@@ -2,5 +2,5 @@
 
 ```@autodocs
 Modules = [GridapDistributed]
-Pages   = ["Adaptivity.jl"]
+Pages   = ["Adaptivity.jl","Redistribution.jl"]
 ```

docs/src/Geometry.md

@@ -3,4 +3,13 @@
 ```@autodocs
 Modules = [GridapDistributed]
 Pages   = ["Geometry.jl"]
-```
+```
+
+## MacroDiscreteModels
+
+These are functionalities to select and globally number the interfaces between processors:
+
+```@autodocs
+Modules = [GridapDistributed]
+Pages   = ["MacroDiscreteModels.jl"]
+```