Add local testing dependencies.

Author: guzman-raphael

.devcontainer/Dockerfile

@@ -7,4 +7,8 @@ FROM mcr.microsoft.com/devcontainers/base:bullseye
 
 RUN \
     apt update && \
-    apt-get install bash-completion -y
+    apt-get install bash-completion graphviz -y
+
+ENV DJ_HOST fakeservices.datajoint.io
+ENV DJ_USER root
+ENV DJ_PASS simple

.devcontainer/devcontainer.json

@@ -12,12 +12,13 @@
 	"features": {
 		"ghcr.io/devcontainers/features/docker-in-docker:2": {},
 		"ghcr.io/devcontainers/features/git:1": {},
-		"ghcr.io/rocker-org/devcontainer-features/apt-packages:1": {},
 		"ghcr.io/eitsupi/devcontainer-features/jq-likes:1": {},
 		"ghcr.io/guiyomh/features/vim:0": {},
-		"ghcr.io/devcontainers/features/python:1": {},
+		"ghcr.io/devcontainers/features/python:1": {
+			"version": "3.7"
+		},
 	},
-	"postCreateCommand": "pip install black",
+	"postCreateCommand": "pip install flake8 black faker ipykernel nose nose-cov && pip install -e . && MYSQL_VER=5.7 MINIO_VER=RELEASE.2022-08-11T04-37-28Z docker compose -f local-docker-compose.yml up --build -d",
 	"customizations": {
 		"vscode": {
 			"extensions": [

.devcontainer/docker-compose.yaml

@@ -1,4 +1,4 @@
-version: '3'
+version: "3"
 
 services:
   app:
@@ -19,5 +19,5 @@ services:
     # security_opt:
     #   - seccomp:unconfined
 
-    # Use "forwardPorts" in **devcontainer.json** to forward an app port locally. 
+    # Use "forwardPorts" in **devcontainer.json** to forward an app port locally.
     # (Adding the "ports" property to this file will not forward from a Codespace.)

local-docker-compose.yml

@@ -1,8 +1,9 @@
-# PY_VER=3.8 MYSQL_VER=5.7 DISTRO=alpine MINIO_VER=RELEASE.2022-08-11T04-37-28Z HOST_UID=$(id -u) docker compose -f local-docker-compose.yml up --build
+# MYSQL_VER=5.7 MINIO_VER=RELEASE.2022-08-11T04-37-28Z docker compose -f local-docker-compose.yml up --build
 version: '2.4'
-x-net: &net
+x-net:
+  &net
   networks:
-      - main
+    - main
 services:
   db:
     <<: *net
@@ -28,23 +29,29 @@ services:
     #   - ./minio/config:/root/.minio
     command: server --address ":9000" /data
     healthcheck:
-      test: ["CMD", "curl", "--fail", "http://minio:9000/minio/health/live"]
+      test:
+        [
+          "CMD",
+          "curl",
+          "--fail",
+          "http://minio:9000/minio/health/live"
+        ]
       timeout: 5s
       retries: 60
       interval: 1s
   fakeservices.datajoint.io:
     <<: *net
     image: datajoint/nginx:v0.2.4
     environment:
-    - ADD_db_TYPE=DATABASE
-    - ADD_db_ENDPOINT=db:3306
-    - ADD_minio_TYPE=MINIO
-    - ADD_minio_ENDPOINT=minio:9000
-    - ADD_minio_PORT=80 # allow unencrypted connections
-    - ADD_minio_PREFIX=/datajoint
-    - ADD_browser_TYPE=MINIOADMIN
-    - ADD_browser_ENDPOINT=minio:9000
-    - ADD_browser_PORT=80 # allow unencrypted connections
+      - ADD_db_TYPE=DATABASE
+      - ADD_db_ENDPOINT=db:3306
+      - ADD_minio_TYPE=MINIO
+      - ADD_minio_ENDPOINT=minio:9000
+      - ADD_minio_PORT=80 # allow unencrypted connections
+      - ADD_minio_PREFIX=/datajoint
+      - ADD_browser_TYPE=MINIOADMIN
+      - ADD_browser_ENDPOINT=minio:9000
+      - ADD_browser_PORT=80 # allow unencrypted connections
     ports:
       - "80:80"
       - "443:443"
@@ -55,59 +62,5 @@ services:
         condition: service_healthy
       minio:
         condition: service_healthy
-  app:
-    <<: *net
-    image: datajoint/djtest:py${PY_VER}-${DISTRO}
-    depends_on:
-      fakeservices.datajoint.io:
-        condition: service_healthy
-    environment:
-      - DJ_HOST=fakeservices.datajoint.io
-      - DJ_USER=root
-      - DJ_PASS=simple
-      - DJ_TEST_HOST=fakeservices.datajoint.io
-      - DJ_TEST_USER=datajoint
-      - DJ_TEST_PASSWORD=datajoint
-      # If running tests locally, make sure to add entry in /etc/hosts for 127.0.0.1 fakeservices.datajoint.io
-      - S3_ENDPOINT=fakeservices.datajoint.io
-      - S3_ACCESS_KEY=datajoint
-      - S3_SECRET_KEY=datajoint
-      - S3_BUCKET=datajoint.test
-      - PYTHON_USER=dja
-      - JUPYTER_PASSWORD=datajoint
-      - DISPLAY
-    working_dir: /src
-    command:
-      - sh
-      - -c
-      - |
-        set -e
-        pip install --user nose nose-cov
-        pip install -e .
-        pip list --format=freeze | grep datajoint
-        ## You may run the below tests once sh'ed into container i.e. docker exec -it datajoint-python_app_1 sh
-        # nosetests -vsw tests; #run all tests
-        # nosetests -vs --tests=tests.test_external_class:test_insert_and_fetch; #run specific basic test
-        # nosetests -vs --tests=tests.test_fetch:TestFetch.test_getattribute_for_fetch1; #run specific Class test
-        # flake8 datajoint --count --select=E9,F63,F7,F82 --show-source --statistics
-        # flake8 --ignore=E203,E722,W503 datajoint --count --max-complexity=62 --max-line-length=127 --statistics
-        # black datajoint --check -v
-        ## Remote debugger
-        set +e
-        while true
-        do
-          python -m ptvsd --host 0.0.0.0 --port 5678 --wait .
-          sleep 2
-        done
-    ports:
-      - "8888:8888"
-      - "5678:5678"
-    user: ${HOST_UID}:anaconda
-    volumes:
-      - .:/src
-      - /tmp/.X11-unix:/tmp/.X11-unix:rw
-      # Additional mounted notebooks may go here
-      # - ./notebook:/home/dja/notebooks
-      # - ../dj-python-101/ch1:/home/dja/tutorials
 networks:
   main: