update dependencies for ubuntu-latest/py3.12

Author: github-actions

requirements/ubuntu-latest_py3.12.txt

@@ -10,6 +10,8 @@ aflow==0.0.11
     #   matminer (pyproject.toml)
 alabaster==1.0.0
     # via sphinx
+annotated-doc==0.0.4
+    # via typer
 ase==3.27.0
     # via
     #   aflow
@@ -28,22 +30,24 @@ beautifulsoup4==4.14.3
     # via aflow
 bibtexparser==1.4.4
     # via pymatgen
-black==26.1.0
+black==26.3.1
     # via
     #   matminer
     #   matminer (pyproject.toml)
-certifi==2026.1.4
+certifi==2026.2.25
     # via requests
 cffi==2.0.0
     # via cryptography
-charset-normalizer==3.4.4
+charset-normalizer==3.4.6
     # via requests
 citrination-client==6.5.1
     # via
     #   matminer
     #   matminer (pyproject.toml)
 click==8.3.1
-    # via black
+    # via
+    #   black
+    #   typer
 contourpy==1.3.3
     # via matplotlib
 coverage[toml]==7.13.4
@@ -52,7 +56,7 @@ coverage[toml]==7.13.4
     #   matminer
     #   matminer (pyproject.toml)
     #   pytest-cov
-coveralls==4.0.2
+coveralls==4.1.0
     # via
     #   matminer
     #   matminer (pyproject.toml)
@@ -66,8 +70,6 @@ dill==0.4.1
     # via pylint
 dnspython==2.8.0
     # via pymongo
-docopt==0.6.2
-    # via coveralls
 docutils==0.22.4
     # via sphinx
 dscribe==2.1.2
@@ -80,7 +82,7 @@ flake8==7.3.0
     # via
     #   matminer
     #   matminer (pyproject.toml)
-fonttools==4.61.1
+fonttools==4.62.1
     # via matplotlib
 globus-sdk==3.65.0
     # via
@@ -93,11 +95,11 @@ httplib2==0.31.2
     #   matminer (pyproject.toml)
 idna==3.11
     # via requests
-imagesize==1.4.1
+imagesize==2.0.0
     # via sphinx
 iniconfig==2.3.0
     # via pytest
-isort==7.0.0
+isort==8.0.1
     # via pylint
 jinja2==3.1.6
     # via
@@ -119,10 +121,12 @@ jsonschema==4.26.0
     #   mdf-toolbox
 jsonschema-specifications==2025.9.1
     # via jsonschema
-kiwisolver==1.4.9
+kiwisolver==1.5.0
     # via matplotlib
 llvmlite==0.46.0
     # via numba
+markdown-it-py==4.0.0
+    # via rich
 markupsafe==3.0.3
     # via jinja2
 matminer[aflow,citrine,describe,dev,mdfforge,mpds] @ file:///home/runner/work/matminer/matminer
@@ -141,7 +145,9 @@ mdf-forge==0.8.0
     #   matminer (pyproject.toml)
 mdf-toolbox==0.7.1
     # via mdf-forge
-monty==2025.3.3
+mdurl==0.1.2
+    # via markdown-it-py
+monty==2026.2.18
     # via
     #   matminer
     #   matminer (pyproject.toml)
@@ -150,13 +156,13 @@ mpmath==1.3.0
     # via sympy
 mypy-extensions==1.1.0
     # via black
-narwhals==2.16.0
+narwhals==2.18.0
     # via plotly
 networkx==3.6.1
     # via pymatgen
-numba==0.63.1
+numba==0.64.0
     # via sparse
-numpy==2.3.5
+numpy==2.4.3
     # via
     #   aflow
     #   ase
@@ -192,13 +198,13 @@ pandas==2.3.3
     #   pymatgen
 pathspec==1.0.4
     # via black
-pillow==12.1.0
+pillow==12.1.1
     # via matplotlib
-platformdirs==4.5.1
+platformdirs==4.9.4
     # via
     #   black
     #   pylint
-plotly==6.5.2
+plotly==6.6.0
     # via pymatgen
 pluggy==1.6.0
     # via
@@ -213,10 +219,11 @@ pyflakes==3.4.0
 pygments==2.19.2
     # via
     #   pytest
+    #   rich
     #   sphinx
-pyjwt[crypto]==2.11.0
+pyjwt[crypto]==2.12.1
     # via globus-sdk
-pylint==4.0.4
+pylint==4.0.5
     # via
     #   matminer
     #   matminer (pyproject.toml)
@@ -260,7 +267,7 @@ python-dateutil==2.9.0.post0
     #   pandas
 pytokens==0.4.1
     # via black
-pytz==2025.2
+pytz==2026.1.post1
     # via pandas
 pyyaml==6.0.3
     # via citrination-client
@@ -279,6 +286,8 @@ requests==2.32.5
     #   mdf-toolbox
     #   pymatgen
     #   sphinx
+rich==14.3.3
+    # via typer
 roman-numerals==4.1.0
     # via sphinx
 rpds-py==0.30.0
@@ -294,14 +303,16 @@ scikit-learn==1.8.0
     #   dscribe
     #   matminer
     #   matminer (pyproject.toml)
-scipy==1.17.0
+scipy==1.17.1
     # via
     #   ase
     #   dscribe
     #   matminer
     #   matminer (pyproject.toml)
     #   pymatgen
     #   scikit-learn
+shellingham==1.5.4
+    # via typer
 six==1.17.0
     # via
     #   aflow
@@ -312,7 +323,7 @@ snowballstemmer==3.0.1
     # via sphinx
 soupsieve==2.8.3
     # via beautifulsoup4
-sparse==0.17.0
+sparse==0.18.0
     # via dscribe
 spglib==2.7.0
     # via pymatgen
@@ -337,7 +348,7 @@ sympy==1.14.0
     #   matminer
     #   matminer (pyproject.toml)
     #   pymatgen
-tabulate==0.9.0
+tabulate==0.10.0
     # via pymatgen
 termcolor==3.3.0
     # via aflow
@@ -351,14 +362,16 @@ tqdm==4.67.3
     #   matminer (pyproject.toml)
     #   mdf-forge
     #   pymatgen
+typer==0.24.1
+    # via coveralls
 typing-extensions==4.15.0
     # via
     #   beautifulsoup4
     #   referencing
     #   spglib
 tzdata==2025.3
     # via pandas
-ujson==5.11.0
+ujson==5.12.0
     # via
     #   matminer
     #   matminer (pyproject.toml)