Merge branch 'main' into flexref-ions

Author: amjjbonvin

src/haddock/modules/refinement/emref/cns/emref.cns

@@ -10,7 +10,7 @@
 !
 
 if ( $log_level = "verbose" ) then
-    set message=normal echo=on end
+    set message=all echo=on end
 elseif ( $log_level = "normal" ) then
     set message=normal echo=off end
 else
@@ -161,7 +161,7 @@ if ($data.randremoval eq true) then
 end if
 
 if ( $log_level = "verbose" ) then
-    set message=normal echo=on end
+    set message=all echo=on end
 elseif ( $log_level = "normal" ) then
     set message=normal echo=off end
 else

src/haddock/modules/refinement/flexref/cns/flexref.cns

@@ -11,7 +11,7 @@
 ! ***********************************************************************
 
 if ( $log_level = "verbose" ) then
-    set message=normal echo=on end
+    set message=all echo=on end
 elseif ( $log_level = "normal" ) then
     set message=normal echo=off end
 else
@@ -244,7 +244,7 @@ if ($Data.randremoval eq true) then
 end if
 
 if ( $log_level = "verbose" ) then
-    set message=normal echo=on end
+    set message=all echo=on end
 elseif ( $log_level = "normal" ) then
     set message=normal echo=off end
 else

src/haddock/modules/refinement/mdref/cns/mdref.cns

@@ -10,7 +10,7 @@
 !
 
 if ( $log_level = "verbose" ) then
-    set message=normal echo=on end
+    set message=all echo=on end
 elseif ( $log_level = "normal" ) then
     set message=normal echo=off end
 else
@@ -186,7 +186,7 @@ if ($Data.randremoval eq true) then
 end if
 
 if ( $log_level = "verbose" ) then
-    set message=normal echo=on end
+    set message=all echo=on end
 elseif ( $log_level = "normal" ) then
     set message=normal echo=off end
 else

src/haddock/modules/sampling/rigidbody/cns/rigidbody.cns

@@ -12,7 +12,7 @@
 ! ***********************************************************************
 
 if ( $log_level = "verbose" ) then
-    set message=normal echo=on end
+    set message=all echo=on end
 elseif ( $log_level = "normal" ) then
     set message=normal echo=off end
 else
@@ -165,7 +165,7 @@ if ($Data.randremoval eq true) then
 end if
 
 if ( $log_level = "verbose" ) then
-    set message=normal echo=on end
+    set message=all echo=on end
 elseif ( $log_level = "normal" ) then
     set message=normal echo=off end
 else
@@ -304,7 +304,7 @@ while ($nrig < $SaProtocol.ntrials) loop trials
     evaluate ($nrig = $nrig + 1)
 
     if ( $log_level = "verbose" ) then
-        set message=normal echo=on end
+        set message=all echo=on end
     elseif ( $log_level = "normal" ) then
         set message=normal echo=off end
     else

src/haddock/modules/scoring/emscoring/cns/emscoring.cns

@@ -11,7 +11,7 @@
 !
 
 if ( $log_level = "verbose" ) then
-    set message=normal echo=on end
+    set message=all echo=on end
 elseif ( $log_level = "normal" ) then
     set message=normal echo=off end
 else

src/haddock/modules/scoring/mdscoring/cns/mdscoring.cns

@@ -10,7 +10,7 @@
 !
 
 if ( $log_level = "verbose" ) then
-    set message=normal echo=on end
+    set message=all echo=on end
 elseif ( $log_level = "normal" ) then
     set message=normal echo=off end
 else
@@ -154,7 +154,7 @@ set seed $seed end
 
 
 if ( $log_level = "verbose" ) then
-    set message=normal echo=on end
+    set message=all echo=on end
 elseif ( $log_level = "normal" ) then
     set message=normal echo=off end
 else

src/haddock/modules/topology/topoaa/cns/generate-topology.cns

@@ -363,7 +363,7 @@ if ( $select = 0 ) then
 end if
 
 if ( $log_level = "verbose" ) then
-    set message=verbose echo=on end
+    set message=all echo=on end
 elseif ( $log_level = "normal") then
     set message=normal echo=off end
 else