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Add citation file with Zenodo DOI
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CITATION.cff

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cff-version: 1.2.0
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title: "SimPlot-CL"
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message: "If you use SimPlot-CL in your research, please cite it using the metadata below."
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type: software
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authors:
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- family-names: "Strotjohann"
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given-names: "Keno"
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orcid: "https://orcid.org/0009-0003-3675-3039"
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affiliation:
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- "Swiss Tropical and Public Health Institute"
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- "University of Basel"
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- "Swiss Institute of Bioinformatics"
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- family-names: "Hodcroft"
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given-names: "Emma B"
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orcid: "https://orcid.org/0000-0002-0078-2212"
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affiliation:
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- "Swiss Tropical and Public Health Institute"
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- "University of Basel"
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- "Swiss Institute of Bioinformatics"
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repository-code: "https://github.com/hodcroftlab/simplot-cl"
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url: "https://github.com/hodcroftlab/simplot-cl"
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version: "1.0.0"
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date-released: 2026-02-26
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license: "AGPL-3.0-only"
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keywords:
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- bioinformatics
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- viral genomics
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- recombination
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- similarity plot
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- sequence analysis
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- command-line tool
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abstract: >
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SimPlot-CL is a lightweight, Python-based command-line tool for generating
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similarity plots (SimPlots) from nucleotide sequences.
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It enables automated, reproducible sliding-window similarity analysis
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for viral genomics.
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identifiers:
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- type: doi
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value: 10.5281/zenodo.18863590

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