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‎NOTES.md‎

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|Ontology|Version|
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| :---: | :---: |
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|PCL|2025-07-07|
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|CL|2025-12-17|
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|UBERON|2025-12-04|
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|CL|2026-03-26|
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|UBERON|2026-04-01|
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### ASCT+b Tables
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|Blood|v1.5|revise 2025|
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|Bone-Marrow|v1.6|June 15, 2026|
2020
|Brain|v1.9|June 15, 2026|
21-
|Eye|v1.5|revise February 5, 2026|
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|Eye|v1.5|June 15, 2026|
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|Fallopian_tube|v1.5|June 15, 2026|
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|Gingiva|v1.0|Will be added for HRA release availability|
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|Heart|v1.7|March 30, 2026|
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|Heart|v1.7|June 15, 2026|
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|Kidney|v1.8|June 15, 2026|
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|Knee|v1.3|revise for February 15, 2026|
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|Knee|v1.3|June 15, 2026|
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|Large_intestine|v1.5|December 15, 2025|
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|Liver|v1.5|December 15, 2025|
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|Lung|v1.6|June 15, 2026|
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|Lymph_node|v1.5|revise for October 1, 2024|
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|Lymph_vasculature|v1.5|revise for April 1, 2025|
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|Main_Bronchus|v1.4|June 15, 2026|
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|Mammary_Gland|v1.0|revise for April 1, 2024|
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|Mouth|v1.2|4/6/2026|
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|Mouth|v1.2|June 15, 2026|
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|Muscular_System|v1.4|5/21/2026 (revised)|
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|Ovary|v1.4|revise for February 6, 2026|
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|Pancreas|v1.4|December 15, 2025|
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|Palatine_Tonsil|v1.2|revise for February 6, 2026|
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|Peripheral_nervous_system|v1.3|revise for April 29, 2026|
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|Placenta|v1.3|NA|
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|Palatine_Tonsil|v1.2|June 15, 2026|
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|Peripheral_nervous_system|v1.3|June 15, 2026|
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|Placenta|v1.3|June 15, 2026|
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|Prostate|v1.2|revise for October 1, 2024|
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|Salivary_Glands|v1.0|Will be added for HRA release availability|
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|Skeleton|v1.3|revise for April 15, 2026|
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|Skin|v1.6|December 15, 2025|
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|Small_intestine|v1.3|revise February 6, 2026 (12/15/2025)|
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|Skin|v1.7|June 15, 2026|
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|Small_intestine|v1.4|June 15, 2026|
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|Spinal_Cord|v1.2|NA|
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|Spleen|v1.6|NA|
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|Spleen|v1.6|June 15, 2026|
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|Thymus|v1.6|NA|
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|Tongue|v|Will be added for HRA release availability|
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|Trachea|v1.1|June 15, 2026|
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|Ureter|NA|revise for April 2023|
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|Urinary_bladder|v1.1|revise for April 2024|
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|Uterus|v1.3|revise February 6, 2026|
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|Uterus|v1.3|June 15, 2026|
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|Blood_vasculature|v1.10|June 15, 2026|

‎docs/Anatomical_Systems/README.md‎

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ASCT+B Validation Reports for Anatomical_Systems (2026-05-27)
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ASCT+B Validation Reports for Anatomical_Systems (2026-06-03)
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=============================================================
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Table of contents

‎docs/Anatomical_Systems/assets/ccf_Anatomical_Systems_graph.pdf‎

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‎docs/Anatomical_Systems/class_Anatomical_Systems_indirect_log.tsv‎

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s slabel user_slabel o olabel user_olabel row_number
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UBERON:0000017 exocrine pancreas exocrine pancreas UBERON:0002330 exocrine system exocrine system 25
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UBERON:0000065 respiratory tract respiratory tract UBERON:0001004 respiratory system respiratory system 34
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UBERON:0000065 respiratory tract respiratory tract UBERON:0001004 respiratory system respiratory system 37
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UBERON:0000065 respiratory tract respiratory tract UBERON:0001004 respiratory system respiratory system 36
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UBERON:0000065 respiratory tract respiratory tract UBERON:0001004 respiratory system respiratory system 35
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UBERON:0000065 respiratory tract respiratory tract UBERON:0001004 respiratory system respiratory system 34
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UBERON:0000978 leg leg UBERON:0000061 anatomical structure anatomical structure 59
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UBERON:0000992 ovary ovary UBERON:0000474 female reproductive system female reproductive system 42
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UBERON:0001911 mammary gland mammary gland UBERON:0002416 integumental system integumental system 33
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UBERON:0003729 mouth mucosa mouth mucosa UBERON:0000165 mouth mouth 20
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UBERON:0003889 fallopian tube fallopian tube UBERON:0003975 internal female genitalia internal female genitalia 43
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UBERON:0004537 blood vasculature blood vasculature UBERON:0004535 cardiovascular system cardiovascular system 13
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UBERON:0004921 subdivision of digestive tract subdivision of digestive tract UBERON:0001555 digestive tract digestive tract 15
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UBERON:0004921 subdivision of digestive tract subdivision of digestive tract UBERON:0001555 digestive tract digestive tract 16
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UBERON:0004921 subdivision of digestive tract subdivision of digestive tract UBERON:0001555 digestive tract digestive tract 18
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UBERON:0004921 subdivision of digestive tract subdivision of digestive tract UBERON:0001555 digestive tract digestive tract 23
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UBERON:0004921 subdivision of digestive tract subdivision of digestive tract UBERON:0001555 digestive tract digestive tract 22
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UBERON:0004921 subdivision of digestive tract subdivision of digestive tract UBERON:0001555 digestive tract digestive tract 21
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UBERON:0004921 subdivision of digestive tract subdivision of digestive tract UBERON:0001555 digestive tract digestive tract 20
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UBERON:0004921 subdivision of digestive tract subdivision of digestive tract UBERON:0001555 digestive tract digestive tract 19
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UBERON:0004921 subdivision of digestive tract subdivision of digestive tract UBERON:0001555 digestive tract digestive tract 17
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UBERON:0010147 male accessory sex gland male accessory sex gland UBERON:0000079 male reproductive system male reproductive system 46
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UBERON:0011143 upper urinary tract upper urinary tract UBERON:0001008 renal system renal system 38
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UBERON:0011143 upper urinary tract upper urinary tract UBERON:0001008 renal system renal system 39

‎docs/Anatomical_Systems/graph.md‎

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# ASCT+B as Graph

‎docs/Blood/README.md‎

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Table of contents
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| | row_number | s | slabel | user_slabel | o | olabel | user_olabel | deltaIC |
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|----|------------------------------------------------------------------------------------------------------------------|---------------------------------------------------------|-------------------------------------------------------|-----------------------------------|---------------------------------------------------------|-----------------------|--------------------------|-----------|
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| 0 | [19](https://docs.google.com/spreadsheets/d/1dlQhZqTwP84U5zuNu8uo_xQ6C-hB9onUQJMWFn25oV8/edit#gid=0&range=19:19) | [CL:0000840](http://purl.obolibrary.org/obo/CL_0000840) | immature conventional dendritic cell | transitional Dendritic Cell (tDC) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC) | 11.2328 |
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| 0 | [19](https://docs.google.com/spreadsheets/d/1dlQhZqTwP84U5zuNu8uo_xQ6C-hB9onUQJMWFn25oV8/edit#gid=0&range=19:19) | [CL:0000840](http://purl.obolibrary.org/obo/CL_0000840) | immature conventional dendritic cell | transitional Dendritic Cell (tDC) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC) | 11.2252 |
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| 5 | [15](https://docs.google.com/spreadsheets/d/1dlQhZqTwP84U5zuNu8uo_xQ6C-hB9onUQJMWFn25oV8/edit#gid=0&range=15:15) | [CL:0002394](http://purl.obolibrary.org/obo/CL_0002394) | CD141-positive myeloid dendritic cell | dendritic cell type 1 (DC1) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC) | nan |
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| 7 | [16](https://docs.google.com/spreadsheets/d/1dlQhZqTwP84U5zuNu8uo_xQ6C-hB9onUQJMWFn25oV8/edit#gid=0&range=16:16) | [CL:0002399](http://purl.obolibrary.org/obo/CL_0002399) | CD1c-positive myeloid dendritic cell | dendritic cell type 2 (DC2) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC) | nan |
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| 9 | [17](https://docs.google.com/spreadsheets/d/1dlQhZqTwP84U5zuNu8uo_xQ6C-hB9onUQJMWFn25oV8/edit#gid=0&range=17:17) | [CL:0002399](http://purl.obolibrary.org/obo/CL_0002399) | CD1c-positive myeloid dendritic cell | dendritic cell type 3 (DC3) | [CL:0001056](http://purl.obolibrary.org/obo/CL_0001056) | dendritic cell, human | dendritic cell (DC) | nan |

‎docs/Blood/assets/ccf_Blood_graph.pdf‎

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‎docs/Blood/class_Blood_log.tsv‎

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row_number s slabel user_slabel o olabel user_olabel deltaIC
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19 CL:0000840 immature conventional dendritic cell transitional Dendritic Cell (tDC) CL:0001056 dendritic cell, human dendritic cell (DC) 11.232755909446595
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19 CL:0000840 immature conventional dendritic cell transitional Dendritic Cell (tDC) CL:0001056 dendritic cell, human dendritic cell (DC) 11.225201682097264
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11 CL:0000816 immature B cell immature B cell UBERON:0000178 Blood Blood
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12 CL:0000787 memory B cell memory B cell UBERON:0000178 Blood Blood
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13 CL:0000788 naive B cell naive B cell UBERON:0000178 Blood Blood

‎docs/Blood/graph.md‎

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# ASCT+B as Graph

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