Merge pull request #345 from hubmapconsortium/remove_cl_present_in_taxon

Update template_generation_tools.py

Author: dosumis

src/template_generation_tools.py

@@ -64,7 +64,7 @@ def generate_class_graph_template(ccf_tools_df :pd.DataFrame, log_dict: dict):
           'OBO_Validated_surrounds': '>A CCFH:IN_OBO',
           'validation_date_surrounds': '>A dc:date'}
 
-  seed_sub = {'ID': 'ID', 'in_subset': 'AI in_subset', 'present_in_taxon': 'AI present_in_taxon'}
+  seed_sub = {'ID': 'ID', 'in_subset': 'AI in_subset'}
   seed_no_valid = {'ID': 'ID', 'ccf_part_of': 'SC ccf_part_of some %', 'ccf_located_in': 'SC ccf_located_in some %'}
   image_report = []
   ug = UberonGraph()
@@ -120,13 +120,13 @@ def generate_class_graph_template(ccf_tools_df :pd.DataFrame, log_dict: dict):
     records.append({'ID': r['o'], 'User_label': r['user_olabel']})
 
     if 'UBERON' in r['s']:
-      records_ub_sub.append({'ID': r['s'], 'present_in_taxon': 'NCBITaxon:9606', 'in_subset': 'human_reference_atlas'})
+      records_ub_sub.append({'ID': r['s'], 'in_subset': 'human_reference_atlas'})
     if 'UBERON' in r['o']:
-      records_ub_sub.append({'ID': r['o'], 'present_in_taxon': 'NCBITaxon:9606', 'in_subset': 'human_reference_atlas'})
+      records_ub_sub.append({'ID': r['o'], 'in_subset': 'human_reference_atlas'})
     if 'CL' in r['s'] and not 'PCL' in r['s']:
-      records_cl_sub.append({'ID': r['s'], 'present_in_taxon': 'NCBITaxon:9606', 'in_subset': 'human_reference_atlas'})
+      records_cl_sub.append({'ID': r['s'], 'in_subset': 'human_reference_atlas'})
     if 'CL' in r['o'] and not 'PCL' in r['o']:
-      records_cl_sub.append({'ID': r['o'], 'present_in_taxon': 'NCBITaxon:9606', 'in_subset': 'human_reference_atlas'})
+      records_cl_sub.append({'ID': r['o'], 'in_subset': 'human_reference_atlas'})
 
     if ('CL' in r['s'] or 'PCL' in r['s']) and 'UBERON' in r['o']:
       terms_ct_as.add(f"({r['s']} {r['o']})")