-
Notifications
You must be signed in to change notification settings - Fork 0
Expand file tree
/
Copy pathqa_level_strategy_comparison.py
More file actions
1017 lines (828 loc) · 45 KB
/
Copy pathqa_level_strategy_comparison.py
File metadata and controls
1017 lines (828 loc) · 45 KB
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
260
261
262
263
264
265
266
267
268
269
270
271
272
273
274
275
276
277
278
279
280
281
282
283
284
285
286
287
288
289
290
291
292
293
294
295
296
297
298
299
300
301
302
303
304
305
306
307
308
309
310
311
312
313
314
315
316
317
318
319
320
321
322
323
324
325
326
327
328
329
330
331
332
333
334
335
336
337
338
339
340
341
342
343
344
345
346
347
348
349
350
351
352
353
354
355
356
357
358
359
360
361
362
363
364
365
366
367
368
369
370
371
372
373
374
375
376
377
378
379
380
381
382
383
384
385
386
387
388
389
390
391
392
393
394
395
396
397
398
399
400
401
402
403
404
405
406
407
408
409
410
411
412
413
414
415
416
417
418
419
420
421
422
423
424
425
426
427
428
429
430
431
432
433
434
435
436
437
438
439
440
441
442
443
444
445
446
447
448
449
450
451
452
453
454
455
456
457
458
459
460
461
462
463
464
465
466
467
468
469
470
471
472
473
474
475
476
477
478
479
480
481
482
483
484
485
486
487
488
489
490
491
492
493
494
495
496
497
498
499
500
501
502
503
504
505
506
507
508
509
510
511
512
513
514
515
516
517
518
519
520
521
522
523
524
525
526
527
528
529
530
531
532
533
534
535
536
537
538
539
540
541
542
543
544
545
546
547
548
549
550
551
552
553
554
555
556
557
558
559
560
561
562
563
564
565
566
567
568
569
570
571
572
573
574
575
576
577
578
579
580
581
582
583
584
585
586
587
588
589
590
591
592
593
594
595
596
597
598
599
600
601
602
603
604
605
606
607
608
609
610
611
612
613
614
615
616
617
618
619
620
621
622
623
624
625
626
627
628
629
630
631
632
633
634
635
636
637
638
639
640
641
642
643
644
645
646
647
648
649
650
651
652
653
654
655
656
657
658
659
660
661
662
663
664
665
666
667
668
669
670
671
672
673
674
675
676
677
678
679
680
681
682
683
684
685
686
687
688
689
690
691
692
693
694
695
696
697
698
699
700
701
702
703
704
705
706
707
708
709
710
711
712
713
714
715
716
717
718
719
720
721
722
723
724
725
726
727
728
729
730
731
732
733
734
735
736
737
738
739
740
741
742
743
744
745
746
747
748
749
750
751
752
753
754
755
756
757
758
759
760
761
762
763
764
765
766
767
768
769
770
771
772
773
774
775
776
777
778
779
780
781
782
783
784
785
786
787
788
789
790
791
792
793
794
795
796
797
798
799
800
801
802
803
804
805
806
807
808
809
810
811
812
813
814
815
816
817
818
819
820
821
822
823
824
825
826
827
828
829
830
831
832
833
834
835
836
837
838
839
840
841
842
843
844
845
846
847
848
849
850
851
852
853
854
855
856
857
858
859
860
861
862
863
864
865
866
867
868
869
870
871
872
873
874
875
876
877
878
879
880
881
882
883
884
885
886
887
888
889
890
891
892
893
894
895
896
897
898
899
900
901
902
903
904
905
906
907
908
909
910
911
912
913
914
915
916
917
918
919
920
921
922
923
924
925
926
927
928
929
930
931
932
933
934
935
936
937
938
939
940
941
942
943
944
945
946
947
948
949
950
951
952
953
954
955
956
957
958
959
960
961
962
963
964
965
966
967
968
969
970
971
972
973
974
975
976
977
978
979
980
981
982
983
984
985
986
987
988
989
990
991
992
993
994
995
996
997
998
999
1000
#!/usr/bin/env python3
"""
QA-Level Training Strategy Implementation - ULTIMATE FIXED VERSION
==============================================================================
This version specifically addresses the float() conversion error by:
1. Properly handling different data types in input columns
2. Ensuring consistent data flow between functions
3. Adding comprehensive debugging and error handling
"""
import pandas as pd
import numpy as np
import torch
import torch.nn as nn
import json
import os
import sys
import random
import warnings
from sklearn.model_selection import ParameterGrid
from sklearn.preprocessing import StandardScaler, MinMaxScaler
from sklearn.linear_model import LinearRegression
from scipy.stats import pearsonr
from tqdm import tqdm
from torch.optim.lr_scheduler import ReduceLROnPlateau
from torch.nn.utils.clip_grad import clip_grad_norm_
import ast
import traceback
import torch.utils.data
from maqua_data import build_qa_merged_dataset, load_question_embeddings
from maqua_mapping import get_questionnaire_mapping as _get_questionnaire_mapping
warnings.filterwarnings('ignore')
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
print(f"Using device: {device}")
# ==================== CORE FUNCTIONS ====================
def create_stratified_cv_folds(user_data, n_folds=9):
"""Create stratified CV folds"""
user_data_copy = user_data.copy()
unique_users = user_data_copy["user_id"].nunique()
if unique_users < n_folds:
raise ValueError(
f"Insufficient users for {n_folds}-fold CV: got {unique_users}. "
"Small-sample debug mode is not supported."
)
user_data_copy["PHQ"] = user_data_copy["output_embeddings"].apply(lambda x: x[0] if isinstance(x, list) else x)
user_data_sorted = user_data_copy.sort_values(by="PHQ", ascending=False)
grouped = user_data_sorted.groupby("user_id", sort=False)
bins = [list() for _ in range(n_folds)]
for i, (user_id, group) in enumerate(grouped):
bins[i % n_folds].append(user_id)
print(f"Created {n_folds} stratified CV folds:")
for i, bin_users in enumerate(bins):
phq_scores = []
for user_id in bin_users:
user_row = user_data_copy[user_data_copy['user_id'] == user_id].iloc[0]
phq_scores.append(user_row['PHQ'])
phq_array = np.array(phq_scores)
print(f" Fold {i+1}: {len(bin_users)} users, PHQ range: {phq_array.min():.3f}-{phq_array.max():.3f}, mean: {phq_array.mean():.3f}")
return bins
def get_questionnaire_mapping(filepath="formatted_data/questions_symptom_outcomes_type.csv"):
"""Load questionnaire mapping (delegates to maqua_mapping)."""
return _get_questionnaire_mapping(filepath, verbose=True)
class LinearRegressionMultitaskQA(nn.Module):
"""Multitask linear regression for QA-level data"""
def __init__(self, input_dim, output_dim):
super(LinearRegressionMultitaskQA, self).__init__()
self.linear = nn.Linear(input_dim, output_dim)
def forward(self, x):
return self.linear(x)
def smart_float_conversion(val, col_name="unknown"):
"""
Smart conversion of various data types to float values
Handles: scalars, strings, lists, arrays, etc.
"""
try:
# Case 1: Already a number
if isinstance(val, (int, float, np.integer, np.floating)):
return [float(val)]
# Case 2: String representation
elif isinstance(val, str):
val = val.strip()
# String representation of a list/array
if val.startswith('[') and val.endswith(']'):
try:
# Parse list string safely
parsed_list = ast.literal_eval(val)
if isinstance(parsed_list, (list, tuple)):
return [float(item) for item in parsed_list]
else:
return [float(parsed_list)]
except (ValueError, SyntaxError, TypeError):
# If eval fails, try manual parsing
val_clean = val.strip('[]')
numbers = [float(x.strip()) for x in val_clean.split(',') if x.strip()]
return numbers
# Single string number
else:
return [float(val)]
# Case 3: Already a list/tuple/array
elif isinstance(val, (list, tuple, np.ndarray)):
return [float(item) for item in val]
# Case 4: Other types - attempt direct conversion
else:
return [float(val)]
except Exception as e:
raise ValueError(
f"Cannot convert value {val!r} (type: {type(val).__name__}) "
f"to float in column {col_name}"
) from e
def prepare_qa_level_data_ultimate(data, embedding_strategy='full', separate_dudit_audit=True):
"""
Ultimate QA-level data preparation with robust type handling
"""
print(f"DEBUG: Starting QA-level data preparation with strategy '{embedding_strategy}'")
print(f"DEBUG: Input data shape: {data.shape}")
print(f"DEBUG: Input data columns sample: {list(data.columns)[:10]}")
qa_level_data = []
# Identify column types
all_cols = list(data.columns)
generic_input_cols = [col for col in all_cols if col.startswith("input_") and not col.startswith("input_qu_embed_")]
qu_embed_cols = [col for col in all_cols if col.startswith("input_qu_embed_")]
output_cols = sorted([col for col in all_cols if col.startswith("output_")])
print(f"DEBUG: Found {len(generic_input_cols)} generic input columns")
print(f"DEBUG: Found {len(qu_embed_cols)} question embedding columns")
print(f"DEBUG: Found {len(output_cols)} output columns")
# Select columns based on strategy
if embedding_strategy == 'full':
selected_input_cols = generic_input_cols + qu_embed_cols
elif embedding_strategy == 'question_only':
selected_input_cols = qu_embed_cols
else:
selected_input_cols = generic_input_cols
print(f"DEBUG: Selected {len(selected_input_cols)} input columns for strategy '{embedding_strategy}'")
# Handle DUDIT/AUDIT combination
if not separate_dudit_audit:
dudit_col, audit_col = 'output_4', 'output_5'
if dudit_col in output_cols and audit_col in output_cols:
data = data.copy()
data["output_combined_dudit_audit"] = data[dudit_col] + data[audit_col]
output_cols = [col for col in output_cols if col not in [dudit_col, audit_col]]
output_cols.insert(4, "output_combined_dudit_audit")
output_cols = sorted(output_cols)
print(f"DEBUG: Final output columns: {output_cols}")
# Process each row
for idx, row in data.iterrows():
user_id = row['user_id']
question_code = row['question_code']
# Process input embeddings with smart conversion
input_embeddings = []
for col in selected_input_cols:
val = row[col]
converted_vals = smart_float_conversion(val, col)
input_embeddings.extend(converted_vals)
# Process output embeddings
output_embeddings = []
for col in output_cols:
val = row[col]
converted_vals = smart_float_conversion(val, col)
# Outputs should be single values, so take the first
output_embeddings.append(converted_vals[0])
qa_level_data.append({
'user_id': user_id,
'question_code': question_code,
'input_embeddings': input_embeddings,
'output_embeddings': output_embeddings
})
# Debug first few rows
if idx < 3:
print(f"DEBUG: Row {idx} - User: {user_id}, Question: {question_code}")
print(f"DEBUG: Input length: {len(input_embeddings)}, Output length: {len(output_embeddings)}")
print(f"DEBUG: First few inputs: {input_embeddings[:5]}")
print(f"DEBUG: Outputs: {output_embeddings}")
result_df = pd.DataFrame(qa_level_data)
if len(result_df) > 0:
print(f"DEBUG: Final QA-level data shape: {result_df.shape}")
print(f"DEBUG: Sample input embedding length: {len(result_df['input_embeddings'].iloc[0])}")
print(f"DEBUG: Sample output embedding length: {len(result_df['output_embeddings'].iloc[0])}")
print(f"DEBUG: Data types - inputs: {type(result_df['input_embeddings'].iloc[0])}, outputs: {type(result_df['output_embeddings'].iloc[0])}")
return result_df
def filter_qa_pairs_by_strategy(qa_data, question_strategy, all_outcome_mappings):
"""
Filter QA pairs by strategy - CORRECTED LOGIC FOR MULTITASK
For multitask models:
- all_questions: Use ALL questions (specific + general)
- specific_only: Use ONLY questions that belong to specific questionnaires (remove general)
- general_only: Use ONLY general questions (questions not in any questionnaire)
- combined: Same as all_questions for multitask
"""
print(f"DEBUG: Filtering {len(qa_data)} QA pairs using strategy '{question_strategy}'")
# Get all questions that belong to specific questionnaires
all_specific_questions = set()
for outcome, questions in all_outcome_mappings['questionnaire_specific'].items():
all_specific_questions.update(questions)
print(all_specific_questions)
print(f"DEBUG: Found {len(all_specific_questions)} questions across all specific questionnaires")
# Check what questions we have in data
unique_questions_in_data = set(qa_data['question_code'].unique())
print(f"DEBUG: Data contains {len(unique_questions_in_data)} unique question codes")
# Find which questions in our data are specific vs general
specific_questions_in_data = all_specific_questions.intersection(unique_questions_in_data)
general_questions_in_data = unique_questions_in_data - all_specific_questions
print(f"DEBUG: Questions in data that are questionnaire-specific: {len(specific_questions_in_data)}")
print(f"DEBUG: Questions in data that are general: {len(general_questions_in_data)}")
if len(general_questions_in_data) > 0:
print(f"DEBUG: Sample general questions: {list(general_questions_in_data)[:5]}")
if len(specific_questions_in_data) > 0:
print(f"DEBUG: Sample specific questions: {list(specific_questions_in_data)[:5]}")
# Apply filtering based on strategy
if question_strategy == 'all_questions':
result = qa_data.copy()
print(f"DEBUG: 'all_questions' strategy - keeping all {len(result)} pairs")
elif question_strategy == 'specific_only':
# CORRECTED: Only keep questions that belong to specific questionnaires
result = qa_data[qa_data['question_code'].isin(specific_questions_in_data)]
print(f"DEBUG: 'specific_only' strategy - keeping only questionnaire-specific questions: {len(result)} pairs")
elif question_strategy == 'general_only':
# Only keep questions that don't belong to any questionnaire
result = qa_data[qa_data['question_code'].isin(general_questions_in_data)]
print(f"DEBUG: 'general_only' strategy - keeping only general questions: {len(result)} pairs")
elif question_strategy == 'combined':
# For multitask, combined is same as all_questions
result = qa_data.copy()
print(f"DEBUG: 'combined' strategy - keeping all questions (same as all_questions): {len(result)} pairs")
else:
raise ValueError(f"Unknown question strategy: {question_strategy}")
# Verify the filtering worked correctly
if len(result) > 0:
result_questions = set(result['question_code'].unique())
print(f"DEBUG: Result contains {len(result_questions)} unique question codes")
# Check the composition
result_specific = result_questions.intersection(specific_questions_in_data)
result_general = result_questions.intersection(general_questions_in_data)
print(f"DEBUG: Result composition - Specific: {len(result_specific)}, General: {len(result_general)}")
# Verify strategy was applied correctly
if question_strategy == 'specific_only' and len(result_general) > 0:
print(f"WARNING: specific_only strategy still contains {len(result_general)} general questions!")
elif question_strategy == 'general_only' and len(result_specific) > 0:
print(f"WARNING: general_only strategy still contains {len(result_specific)} specific questions!")
return result
def aggregate_predictions_by_questionnaire(test_df, outcome_names, questionnaire_mapping):
"""Aggregate predictions by questionnaire"""
print(f"DEBUG: Starting questionnaire aggregation for {len(test_df)} QA pairs")
print(f"DEBUG: Unique users in test set: {test_df['user_id'].nunique()}")
print(f"DEBUG: Questionnaire mapping keys: {list(questionnaire_mapping.keys())}")
user_level_results = []
# 处理每个用户
for user_id in test_df['user_id'].unique():
user_data = test_df[test_df['user_id'] == user_id]
# 获取该用户的真实问卷分数 (应该所有QA对的真实分数都相同)
true_labels = user_data['output_embeddings'].iloc[0] # 取第一个,因为同一用户的真实分数应该相同
print(f"DEBUG: Processing user {user_id} with {len(user_data)} QA pairs")
print(f"DEBUG: True labels shape: {len(true_labels) if isinstance(true_labels, (list, np.ndarray)) else 'scalar'}")
# 处理每个问卷
for outcome_idx, outcome_name in enumerate(outcome_names):
true_score = true_labels[outcome_idx]
# 获取该问卷对应的问题列表
if outcome_name in questionnaire_mapping:
questionnaire_questions = set(questionnaire_mapping[outcome_name])
# 找到属于该问卷的QA对
relevant_qa = user_data[user_data['question_code'].isin(questionnaire_questions)]
if len(relevant_qa) > 0:
# 从每个QA对的预测中提取该问卷对应的输出
questionnaire_predictions = []
for _, qa_row in relevant_qa.iterrows():
# qa_row['predictions'] 应该是长度为10的列表 (multitask输出)
pred_vector = qa_row['predictions']
if isinstance(pred_vector, (list, np.ndarray)) and len(pred_vector) > outcome_idx:
questionnaire_predictions.append(pred_vector[outcome_idx])
else:
print(f"WARNING: Invalid prediction format for user {user_id}, question {qa_row['question_code']}")
# 对该问卷的所有QA对预测求平均值
if len(questionnaire_predictions) > 0:
final_pred_score = np.mean(questionnaire_predictions)
print(f"DEBUG: {outcome_name} for user {user_id}: {len(questionnaire_predictions)} predictions, avg = {final_pred_score:.4f}, true = {true_score:.4f}")
else:
# 如果没有找到相关问题,使用所有问题的平均值作为fallback
all_predictions = [pred[outcome_idx] for pred in user_data['predictions']
if isinstance(pred, (list, np.ndarray)) and len(pred) > outcome_idx]
final_pred_score = np.mean(all_predictions) if all_predictions else 0.0
print(f"DEBUG: {outcome_name} for user {user_id}: No specific questions found, using fallback avg = {final_pred_score:.4f}")
else:
# 如果没有找到该问卷的问题,使用所有问题的平均值
all_predictions = [pred[outcome_idx] for pred in user_data['predictions']
if isinstance(pred, (list, np.ndarray)) and len(pred) > outcome_idx]
final_pred_score = np.mean(all_predictions) if all_predictions else 0.0
print(f"DEBUG: {outcome_name} for user {user_id}: No relevant QA pairs, using all questions avg = {final_pred_score:.4f}")
else:
# 问卷不在映射中,使用所有问题的平均值
all_predictions = [pred[outcome_idx] for pred in user_data['predictions']
if isinstance(pred, (list, np.ndarray)) and len(pred) > outcome_idx]
final_pred_score = np.mean(all_predictions) if all_predictions else 0.0
print(f"DEBUG: {outcome_name} for user {user_id}: Not in mapping, using all questions avg = {final_pred_score:.4f}")
# 存储结果
user_level_results.append({
'user_id': user_id,
'questionnaire': outcome_name,
'true_score': true_score,
'pred_score': final_pred_score
})
result_df = pd.DataFrame(user_level_results)
print(f"DEBUG: Final user-level results shape: {result_df.shape}")
print(f"DEBUG: Sample results:")
for outcome in outcome_names[:3]: # 显示前3个问卷的样本
outcome_data = result_df[result_df['questionnaire'] == outcome]
if len(outcome_data) > 0:
print(f" {outcome}: {len(outcome_data)} users, true range: {outcome_data['true_score'].min():.3f}-{outcome_data['true_score'].max():.3f}, pred range: {outcome_data['pred_score'].min():.3f}-{outcome_data['pred_score'].max():.3f}")
return result_df
def qa_level_linear_regression_training_with_hyperparameter_search(train_inputs, train_true, dev_inputs, dev_true,
test_inputs, test_true, task_type, long_training=False):
"""Train with hyperparameter search"""
device = torch.device('cuda' if torch.cuda.is_available() else 'cpu')
# Simplified hyperparameter grid
param_grid = {
'lr': [0.01, 0.001],
'weight_decay': [1e-5, 1e-4],
'batch_size': [64],
'epochs': [500],
'patience': [50]
}
best_dev_loss = float('inf')
best_model = None
best_params = None
best_test_pred = None
print(f" Starting hyperparameter search with {len(list(ParameterGrid(param_grid)))} configurations...")
for params in ParameterGrid(param_grid):
try:
model = LinearRegressionMultitaskQA(train_inputs.shape[1], train_true.shape[1]).to(device)
train_inputs_gpu = train_inputs.to(device)
train_true_gpu = train_true.to(device)
dev_inputs_gpu = dev_inputs.to(device)
dev_true_gpu = dev_true.to(device)
test_inputs_gpu = test_inputs.to(device)
optimizer = torch.optim.Adam(model.parameters(), lr=params['lr'], weight_decay=params['weight_decay'])
scheduler = ReduceLROnPlateau(optimizer, mode='min', factor=0.5, patience=params['patience']//4)
criterion = nn.MSELoss()
model_best_loss = float('inf')
patience_counter = 0
dataset = torch.utils.data.TensorDataset(train_inputs_gpu, train_true_gpu)
dataloader = torch.utils.data.DataLoader(dataset, batch_size=params['batch_size'], shuffle=True)
for epoch in range(params['epochs']):
model.train()
for batch_inputs, batch_targets in dataloader:
optimizer.zero_grad()
predictions = model(batch_inputs)
loss = criterion(predictions, batch_targets)
loss.backward()
clip_grad_norm_(model.parameters(), max_norm=1.0)
optimizer.step()
# Validation check every 20 epochs.
# Note: patience_counter increments only at these checkpoints,
# so effective patience = params['patience'] × 20 epochs.
if epoch % 20 == 0:
model.eval()
with torch.no_grad():
dev_pred = model(dev_inputs_gpu)
dev_loss = criterion(dev_pred, dev_true_gpu)
scheduler.step(dev_loss)
if dev_loss < model_best_loss:
model_best_loss = dev_loss
patience_counter = 0
else:
patience_counter += 1
if patience_counter >= params['patience']:
break
model.eval()
with torch.no_grad():
final_dev_pred = model(dev_inputs_gpu)
final_dev_loss = criterion(final_dev_pred, dev_true_gpu).item()
if final_dev_loss < best_dev_loss:
best_dev_loss = final_dev_loss
best_params = params.copy()
best_params['final_epoch'] = epoch
with torch.no_grad():
best_test_pred = model(test_inputs_gpu)
best_model = type(model)(train_inputs.shape[1], train_true.shape[1]).to(device)
best_model.load_state_dict(model.state_dict())
except Exception as e:
print(f" Error with params {params}: {e}")
continue
if best_params:
print(f" Best hyperparameters: lr={best_params['lr']}, wd={best_params['weight_decay']}")
print(f" Best dev loss: {best_dev_loss:.6f}")
else:
print(f" No valid hyperparameters found, using defaults")
best_params = {'lr': 0.01, 'weight_decay': 1e-4, 'batch_size': 64, 'epochs': 500, 'patience': 50}
model = LinearRegressionMultitaskQA(train_inputs.shape[1], train_true.shape[1]).to(device)
optimizer = torch.optim.Adam(model.parameters(), lr=best_params['lr'], weight_decay=best_params['weight_decay'])
criterion = nn.MSELoss()
train_inputs_gpu = train_inputs.to(device)
train_true_gpu = train_true.to(device)
dev_inputs_gpu = dev_inputs.to(device)
dev_true_gpu = dev_true.to(device)
test_inputs_gpu = test_inputs.to(device)
fallback_best_loss = float('inf')
fallback_patience = 0
for epoch in range(best_params['epochs']):
model.train()
optimizer.zero_grad()
train_pred = model(train_inputs_gpu)
loss = criterion(train_pred, train_true_gpu)
loss.backward()
clip_grad_norm_(model.parameters(), max_norm=1.0)
optimizer.step()
# Early stopping based on dev loss (check every 20 epochs)
if epoch % 20 == 0:
model.eval()
with torch.no_grad():
dev_pred = model(dev_inputs_gpu)
dev_loss = criterion(dev_pred, dev_true_gpu)
if dev_loss < fallback_best_loss:
fallback_best_loss = dev_loss
fallback_patience = 0
else:
fallback_patience += 1
if fallback_patience >= best_params['patience']:
break
model.eval()
with torch.no_grad():
best_test_pred = model(test_inputs_gpu)
best_model = model
return best_model, best_test_pred, best_params
def calculate_questionnaire_metrics(user_level_results, outcome_names):
"""
计算每个问卷的 correlation 和 MSE
Args:
user_level_results: DataFrame with columns [user_id, questionnaire, true_score, pred_score]
outcome_names: 问卷名称列表
Returns:
correlations: dict {questionnaire_name: correlation_value}
mse_values: dict {questionnaire_name: mse_value}
"""
from scipy.stats import pearsonr
correlations = {}
mse_values = {}
print(f"DEBUG: Calculating metrics for {len(outcome_names)} questionnaires")
for outcome in outcome_names:
outcome_data = user_level_results[user_level_results['questionnaire'] == outcome]
if len(outcome_data) > 1: # 需要至少2个点来计算correlation
true_scores = outcome_data['true_score'].values
pred_scores = outcome_data['pred_score'].values
# 计算correlation
corr, p_value = pearsonr(true_scores, pred_scores)
correlations[outcome] = corr if not np.isnan(corr) else 0.0
# 计算MSE
mse = np.mean((true_scores - pred_scores) ** 2)
mse_values[outcome] = mse
print(f"DEBUG: {outcome}: n={len(outcome_data)}, corr={correlations[outcome]:.4f}, mse={mse_values[outcome]:.4f}")
else:
print(f"WARNING: {outcome} has insufficient data points ({len(outcome_data)}) for correlation calculation")
correlations[outcome] = 0.0
mse_values[outcome] = float('inf')
return correlations, mse_values
def train_qa_level_model_ultimate(qa_level_data, n_folds=9, normalization='minmax', long_training=False):
"""
Ultimate training function that takes pre-prepared QA-level data
"""
outcome_names = ["PHQ", "GAD", "MDQ", "RAADS", "DUDIT", "AUDIT", "BOCS", "ASRS", "NSE", "EDE_QS"]
print(f"\nTraining QA-Level Questionnaire-Specific Multitask (FIXED VERSION)")
print(f"Normalization: {normalization}")
print(f"Using {n_folds}-fold cross-validation with questionnaire-specific aggregation")
# 验证数据结构
if len(qa_level_data) == 0:
print("ERROR: No QA pairs in the dataset!")
return {outcome: [] for outcome in outcome_names}, {outcome: [] for outcome in outcome_names}, []
print(f"QA-level dataset shape: {qa_level_data.shape}")
print(f"Number of unique users: {qa_level_data['user_id'].nunique()}")
print(f"Number of QA pairs: {len(qa_level_data)}")
print(f"Input dimension: {len(qa_level_data['input_embeddings'].iloc[0])}")
print(f"Output dimension: {len(qa_level_data['output_embeddings'].iloc[0])}")
# 获取问卷映射
questionnaire_mapping_data = get_questionnaire_mapping()
questionnaire_mapping = questionnaire_mapping_data['questionnaire_specific']
print(f"DEBUG: Using questionnaire mapping with {len(questionnaire_mapping)} questionnaires")
bins = create_stratified_cv_folds(qa_level_data, n_folds)
all_test_correlations = {outcome: [] for outcome in outcome_names}
all_test_mse = {outcome: [] for outcome in outcome_names}
fold_details = []
for i in range(n_folds):
print(f" Processing fold {i+1}/{n_folds}...")
# 分割用户
test_users = bins[i]
train_dev_bins = list(set(range(n_folds)) - {i})
random.shuffle(train_dev_bins)
n_train_bins = max(1, (len(train_dev_bins) * 2) // 3)
train_users = [user for j in train_dev_bins[:n_train_bins] for user in bins[j]]
dev_users = [user for j in train_dev_bins[n_train_bins:] for user in bins[j]]
train_set = set(train_users)
dev_set = set(dev_users)
test_set = set(test_users)
if not train_set.isdisjoint(dev_set):
raise ValueError(f"User leakage between train/dev in fold {i}")
if not train_set.isdisjoint(test_set):
raise ValueError(f"User leakage between train/test in fold {i}")
if not dev_set.isdisjoint(test_set):
raise ValueError(f"User leakage between dev/test in fold {i}")
# 获取QA对
train = qa_level_data[qa_level_data.user_id.isin(train_users)]
dev = qa_level_data[qa_level_data.user_id.isin(dev_users)]
test = qa_level_data[qa_level_data.user_id.isin(test_users)]
print(f" Train QA pairs: {len(train)} ({len(train_users)} users)")
print(f" Dev QA pairs: {len(dev)} ({len(dev_users)} users)")
print(f" Test QA pairs: {len(test)} ({len(test_users)} users)")
# 数据转换和标准化 (代码与原版相同)
train_inputs_raw = np.array(train["input_embeddings"].tolist())
train_outputs_raw = np.array(train["output_embeddings"].tolist())
dev_inputs_raw = np.array(dev["input_embeddings"].tolist())
dev_outputs_raw = np.array(dev["output_embeddings"].tolist())
test_inputs_raw = np.array(test["input_embeddings"].tolist())
test_outputs_raw = np.array(test["output_embeddings"].tolist())
# 应用标准化
if normalization == 'standard':
scaler = StandardScaler()
train_inputs_norm = scaler.fit_transform(train_inputs_raw)
dev_inputs_norm = scaler.transform(dev_inputs_raw)
test_inputs_norm = scaler.transform(test_inputs_raw)
elif normalization == 'minmax':
scaler = MinMaxScaler()
train_inputs_norm = scaler.fit_transform(train_inputs_raw)
dev_inputs_norm = scaler.transform(dev_inputs_raw)
test_inputs_norm = scaler.transform(test_inputs_raw)
else:
train_inputs_norm = train_inputs_raw
dev_inputs_norm = dev_inputs_raw
test_inputs_norm = test_inputs_raw
# 标准化输出
output_scaler = StandardScaler()
train_outputs_norm = output_scaler.fit_transform(train_outputs_raw)
dev_outputs_norm = output_scaler.transform(dev_outputs_raw)
# 准备张量
train_inputs = torch.tensor(train_inputs_norm, dtype=torch.float32)
train_true = torch.tensor(train_outputs_norm, dtype=torch.float32)
dev_inputs = torch.tensor(dev_inputs_norm, dtype=torch.float32)
dev_true = torch.tensor(dev_outputs_norm, dtype=torch.float32)
test_inputs = torch.tensor(test_inputs_norm, dtype=torch.float32)
test_true = torch.tensor(test_outputs_raw, dtype=torch.float32)
# 训练模型
model, test_pred, best_params = qa_level_linear_regression_training_with_hyperparameter_search(
train_inputs, train_true, dev_inputs, dev_true, test_inputs, test_true, 'multitask', long_training
)
# 反标准化预测
test_pred_denorm = output_scaler.inverse_transform(test_pred.cpu().numpy())
# 准备测试数据DataFrame
test_df = test.copy()
test_df['predictions'] = [pred.tolist() for pred in test_pred_denorm]
print(f" Applying FIXED questionnaire-specific aggregation...")
# 使用修正的聚合函数
user_level_results = aggregate_predictions_by_questionnaire(test_df, outcome_names, questionnaire_mapping)
# 计算指标
fold_correlations, fold_mse = calculate_questionnaire_metrics(user_level_results, outcome_names)
# 存储结果
for outcome in outcome_names:
if outcome in fold_correlations:
all_test_correlations[outcome].append(fold_correlations[outcome])
all_test_mse[outcome].append(fold_mse[outcome])
fold_details.append({
'fold': i+1,
'train_qa_pairs': len(train),
'test_qa_pairs': len(test),
'train_users': len(train_users),
'test_users': len(test_users),
'correlations': fold_correlations,
'mse': fold_mse,
'best_hyperparameters': best_params
})
print(f" Fold {i+1} Results (FIXED):")
for outcome in outcome_names[:3]:
if outcome in fold_correlations:
print(f" {outcome}: Corr={fold_correlations[outcome]:.4f}, MSE={fold_mse[outcome]:.4f}")
# 打印总体结果
print(f"\nOverall QA-Level Results (FIXED):")
for outcome in outcome_names:
if outcome in all_test_correlations and all_test_correlations[outcome]:
corr_mean = np.mean(all_test_correlations[outcome])
corr_std = np.std(all_test_correlations[outcome])
mse_mean = np.mean(all_test_mse[outcome])
mse_std = np.std(all_test_mse[outcome])
print(f"{outcome}: Corr={corr_mean:.4f}±{corr_std:.4f}, MSE={mse_mean:.4f}±{mse_std:.4f}")
else:
print(f"{outcome}: No valid results")
return all_test_correlations, all_test_mse, fold_details
def convert_numpy_to_python(obj):
"""Convert numpy types to Python native types"""
if isinstance(obj, np.integer):
return int(obj)
elif isinstance(obj, np.floating):
return float(obj)
elif isinstance(obj, np.ndarray):
return obj.tolist()
elif isinstance(obj, dict):
return {key: convert_numpy_to_python(value) for key, value in obj.items()}
elif isinstance(obj, list):
return [convert_numpy_to_python(item) for item in obj]
else:
return obj
def fetch_question_embeddings(question_file):
"""Load question embeddings"""
return load_question_embeddings(question_file)
def run_ultimate_questionnaire_specific_comparison():
"""Ultimate comparison function with robust error handling"""
print("="*120)
print("QA-LEVEL QUESTIONNAIRE-SPECIFIC COMPARISON - ULTIMATE FIXED VERSION")
print("="*120)
# Set random seed
random.seed(42)
torch.manual_seed(42)
np.random.seed(42)
if torch.cuda.is_available():
torch.cuda.manual_seed(42)
# Load data
print("Loading data...")
merged_data = build_qa_merged_dataset()
print(f"Final dataset shape: {merged_data.shape}")
# Test strategies
question_strategies = ['specific_only', 'all_questions', 'general_only', 'combined']
embedding_strategy = 'full'
normalization = 'minmax'
outcome_names = ["PHQ", "GAD", "MDQ", "RAADS", "DUDIT", "AUDIT", "BOCS", "ASRS", "NSE", "EDE_QS"]
all_results = {}
summary_results = []
for question_strategy in question_strategies:
print(f"\n{'='*80}")
print(f"TESTING STRATEGY: {question_strategy.upper()}")
print(f"{'='*80}")
config_name = f"qa_level_questionnaire_specific_{question_strategy}_{embedding_strategy}_{normalization}_multitask"
try:
# Get questionnaire mapping with proper general/specific distinction
questionnaire_mapping_data = get_questionnaire_mapping()
# Prepare QA-level data ONCE with ultimate function
qa_level_data = prepare_qa_level_data_ultimate(
merged_data, embedding_strategy=embedding_strategy, separate_dudit_audit=True
)
# Filter by strategy using the updated mapping
strategy_data = filter_qa_pairs_by_strategy(
qa_level_data, question_strategy, questionnaire_mapping_data
)
print(f"Data for strategy '{question_strategy}': {len(strategy_data)} pairs from {strategy_data['user_id'].nunique()} users.")
# Skip if no data
if len(strategy_data) == 0:
print(f"SKIPPING {question_strategy}: No QA pairs found for this strategy")
continue
# Train the model
correlations, mse, fold_details = train_qa_level_model_ultimate(
strategy_data.copy(),
n_folds=9,
normalization=normalization,
long_training=False
)
# Calculate summary statistics
avg_correlations = {}
avg_mse = {}
for outcome in outcome_names:
if outcome in correlations and correlations[outcome]:
corr_vals = correlations[outcome]
mse_vals = mse[outcome]
avg_correlations[outcome] = {
'mean': np.mean(corr_vals),
'std': np.std(corr_vals),
'values': corr_vals
}
avg_mse[outcome] = {
'mean': np.mean(mse_vals),
'std': np.std(mse_vals),
'values': mse_vals
}
overall_avg_corr = np.mean([v['mean'] for v in avg_correlations.values()]) if avg_correlations else 0.0
overall_avg_mse = np.mean([v['mean'] for v in avg_mse.values()]) if avg_mse else float('inf')
# Store results
all_results[config_name] = {
'correlations': correlations,
'mse': mse,
'fold_details': fold_details,
'question_strategy': question_strategy,
'embedding_strategy': embedding_strategy,
'normalization': normalization,
'task_type': 'qa_level_questionnaire_specific',
'avg_correlations': avg_correlations,
'avg_mse': avg_mse
}
summary_results.append({
'config': config_name,
'question_strategy': question_strategy,
'embedding_strategy': embedding_strategy,
'normalization': normalization,
'task_type': 'qa_level_questionnaire_specific',
'overall_avg_corr': overall_avg_corr,
'overall_avg_mse': overall_avg_mse,
'outcome_correlations': avg_correlations,
'outcome_mse': avg_mse
})
print(f"✓ Completed {config_name}: Avg Corr = {overall_avg_corr:.4f}, Avg MSE = {overall_avg_mse:.4f}")
except Exception as e:
print(f"✗ Error in {config_name}: {e}")
traceback.print_exc()
# Results Analysis
print(f"\n{'='*120}")
print("QUESTIONNAIRE-SPECIFIC RESULTS ANALYSIS")
print(f"{'='*120}")
if summary_results:
# Sort results by correlation
summary_results.sort(key=lambda x: x['overall_avg_corr'], reverse=True)
print(f"\n{'QUESTIONNAIRE-SPECIFIC CONFIGURATIONS (by average correlation)'}")
print(f"{'='*120}")
print(f"{'Rank':<5} {'Question Strategy':<15} {'Embedding':<12} {'Norm':<8} {'Avg Corr':<12} {'Avg MSE':<12}")
print("-"*85)
for i, result in enumerate(summary_results, 1):
print(f"{i:<5} {result['question_strategy']:<15} {result['embedding_strategy']:<12} "
f"{result['normalization']:<8} {result['overall_avg_corr']:.4f} {result['overall_avg_mse']:.4f}")
# Strategy impact analysis
print(f"\n{'QUESTION STRATEGY IMPACT ANALYSIS'}")
print(f"{'='*80}")
for strategy in question_strategies:
strategy_results = [r for r in summary_results if r['question_strategy'] == strategy]
if strategy_results:
result = strategy_results[0]
print(f"{strategy:<15}: Corr={result['overall_avg_corr']:.4f}, MSE={result['overall_avg_mse']:.4f}")
else:
print(f"{strategy:<15}: No results (likely skipped)")
# Best configuration per outcome
print(f"\n{'BEST CONFIGURATION FOR EACH OUTCOME'}")
print(f"{'='*120}")
print(f"{'Outcome':<12} {'Question Strategy':<15} {'Correlation':<12} {'MSE':<12}")
print("-"*60)
for outcome in outcome_names:
best_corr = -1
best_config = None
for result in summary_results:
if outcome in result['outcome_correlations']:
corr = result['outcome_correlations'][outcome]['mean']
if corr > best_corr:
best_corr = corr
best_config = result
if best_config:
mse_val = best_config['outcome_mse'][outcome]['mean']
print(f"{outcome:<12} {best_config['question_strategy']:<15} {best_corr:.4f} {mse_val:.4f}")
else:
print(f"{outcome:<12} {'No results':<15} {'N/A':<12} {'N/A':<12}")
# Save results
print(f"\nSaving results...")
output_dir = "model_outputs/qa_level_questionnaire_specific_comparison_ultimate"
os.makedirs(output_dir, exist_ok=True)
# Save detailed results
json_safe_results = convert_numpy_to_python(all_results)
with open(f"{output_dir}/detailed_results.json", 'w') as f:
json.dump(json_safe_results, f, indent=2)
# Save summary results
json_safe_summary = convert_numpy_to_python(summary_results)
with open(f"{output_dir}/summary_results.json", 'w') as f:
json.dump(json_safe_summary, f, indent=2)
# Create comparison CSV
comparison_rows = []
for result in summary_results:
comparison_rows.append({
'Question_Strategy': result['question_strategy'],
'Overall_Correlation': result['overall_avg_corr'],
'Overall_MSE': result['overall_avg_mse'],
'Embedding_Strategy': result['embedding_strategy'],
'Normalization': result['normalization']
})
comparison_df = pd.DataFrame(comparison_rows)
comparison_df.to_csv(f"{output_dir}/strategy_comparison_summary.csv", index=False)
# Save configuration for downstream consumers (e.g. compute_tables.py)
config_info = {
'outcome_names': ["PHQ", "GAD", "MDQ", "RAADS", "DUDIT", "AUDIT", "BOCS", "ASRS", "NSE", "EDE_QS"],
'model_type': 'multitask_qa_level',
'question_strategies': question_strategies,
'embedding_strategy': embedding_strategy,
'normalization': normalization,
'n_folds': 9
}
with open(f"{output_dir}/config.json", 'w') as f:
json.dump(config_info, f, indent=2)
print("Ultimate questionnaire-specific QA-level comparison completed!")
print(f"Results saved to: {output_dir}")
# Print final summary
best_strategy = summary_results[0]
print(f"\n🏆 BEST PERFORMING STRATEGY:")
print(f" Strategy: {best_strategy['question_strategy']}")
print(f" Overall Correlation: {best_strategy['overall_avg_corr']:.4f}")
print(f" Overall MSE: {best_strategy['overall_avg_mse']:.4f}")
else:
print("No successful results to analyze!")
return all_results, summary_results
if __name__ == "__main__":
print("="*80)
print("QA-LEVEL QUESTIONNAIRE-SPECIFIC COMPARISON - ULTIMATE FIXED VERSION")
print("="*80)
print("This script implements questionnaire-specific EVALUATION where:")
print("- Training: Use ALL QA pairs (multitask learns from all questionnaires)")
print("- Prediction: Use ALL QA pairs (model predicts all outcomes)")
print("- Evaluation: For each outcome, aggregate only that questionnaire's QA pairs")
print()
print("QUESTION STRATEGIES FOR MULTITASK:")
print("📊 all_questions: Use ALL questions (questionnaire-specific + general)")
print("🎯 specific_only: Use ONLY questionnaire-specific questions (remove general)")
print("🌐 general_only: Use ONLY general questions (not in any questionnaire)")
print("🔄 combined: Same as all_questions for multitask models")
print()
print("ULTIMATE FIXES INCLUDED:")
print("✅ Smart float conversion handling different data types")
print("✅ Robust input/output data processing")
print("✅ Proper data flow between functions")
print("✅ Comprehensive error handling and debugging")
print("✅ Single-pass data preparation to avoid conflicts")
print("✅ Corrected filtering logic for multitask strategies")
print("="*80)
if not sys.stdin.isatty():
print("Non-interactive mode detected. Skipping interactive run. Use run_qa_level_save_outputs.py for automation.")
sys.exit(0)
choice = input("Run ultimate questionnaire-specific QA-level comparison? (y/n): ").strip().lower()
if choice == 'y':
print("\nRunning ultimate questionnaire-specific QA-level comparison...")
try:
results, summary = run_ultimate_questionnaire_specific_comparison()
print("\n🎉 Comparison completed successfully!")