chore: RSR compliance — fix editorconfig placeholder, replace language-bridges SCM placeholders, remove .machines_readable typo dir, add SPDX+PMPL headers to LICENSE

Co-Authored-By: Claude Opus 4.6 (1M context) <noreply@anthropic.com>

Author: hyperpolymath

.editorconfig

@@ -1,4 +1,4 @@
-# RSR-template-repo - Editor Configuration
+# Cladistics.jl - Editor Configuration
 # https://editorconfig.org
 
 root = true

.machine_readable/ECOSYSTEM.scm

@@ -1,3 +1,21 @@
-;; SPDX-License-Identifier: PMPL-1.0-or-later
-(ecosystem (metadata (version "0.1.0") (last-updated "2026-02-08"))
-  (project (name "language-bridges") (purpose "FFI bridges between languages via Zig") (role ffi-infrastructure)))
+;; SPDX-License-Identifier: MPL-2.0
+;; (PMPL-1.0-or-later preferred; MPL-2.0 required for Julia ecosystem)
+;; ECOSYSTEM.scm - Ecosystem position for Cladistics.jl
+;; Media-Type: application/vnd.ecosystem+scm
+
+(ecosystem
+  (version "1.0")
+  (name "Cladistics.jl")
+  (type "julia-package")
+  (purpose "Phylogenetic cladistics toolkit for Julia")
+
+  (position-in-ecosystem
+    (category "science")
+    (subcategory "phylogenetics")
+    (unique-value ("Cladistic analysis in Julia")))
+
+  (related-projects ())
+
+  (what-this-is ("Julia package for phylogenetic cladistics"))
+
+  (what-this-is-not ()))

.machine_readable/META.scm

@@ -1,3 +1,18 @@
-;; SPDX-License-Identifier: PMPL-1.0-or-later
-(meta (metadata (version "0.1.0") (last-updated "2026-02-08"))
-  (project-info (type monorepo) (languages (zig ada gleam idris2 julia ocaml rescript rust swift)) (license "PMPL-1.0-or-later")))
+;; SPDX-License-Identifier: MPL-2.0
+;; (PMPL-1.0-or-later preferred; MPL-2.0 required for Julia ecosystem)
+;; META.scm - Meta-level information for Cladistics.jl
+;; Media-Type: application/meta+scheme
+
+(meta
+  (architecture-decisions ())
+
+  (development-practices
+    (code-style ())
+    (security
+      (principle "Defense in depth"))
+    (testing ())
+    (versioning "SemVer")
+    (documentation "AsciiDoc")
+    (branching "main for stable"))
+
+  (design-rationale ()))

.machine_readable/STATE.scm

@@ -1,4 +1,37 @@
-;; SPDX-License-Identifier: PMPL-1.0-or-later
-(state (metadata (version "0.1.0") (last-updated "2026-02-08") (status active))
-  (project-context (name "language-bridges") (purpose "FFI bridges between languages via Zig") (completion-percentage 20))
-  (components (component "ada-zig-ffi") (component "gleam-zig-ffi") (component "idris2-zig-ffi") (component "julia-zig-ffi") (component "ocaml-zig-ffi") (component "rescript-zig-ffi") (component "rust-zig-ffi") (component "swift-zig-ffi") (component "zig-c-ffi") (component "zig-container-ffi") (component "zig-fuse-ext") (component "zig-libgit2-ffi") (component "zig-nickel-ffi") (component "zig-systemd-ffi") (component "zig-wireguard")))
+;; SPDX-License-Identifier: MPL-2.0
+;; (PMPL-1.0-or-later preferred; MPL-2.0 required for Julia ecosystem)
+;; STATE.scm - Project state for Cladistics.jl
+;; Media-Type: application/vnd.state+scm
+
+(state
+  (metadata
+    (version "0.1.0")
+    (schema-version "1.0")
+    (created "2026-02-08")
+    (updated "2026-03-14")
+    (project "Cladistics.jl")
+    (repo "github.com/hyperpolymath/Cladistics.jl"))
+
+  (project-context
+    (name "Cladistics.jl")
+    (tagline "Phylogenetic cladistics toolkit for Julia")
+    (tech-stack (julia)))
+
+  (current-position
+    (phase "initial")
+    (overall-completion 10)
+    (components ())
+    (working-features ()))
+
+  (route-to-mvp
+    (milestones ()))
+
+  (blockers-and-issues
+    (critical)
+    (high)
+    (medium)
+    (low))
+
+  (critical-next-actions ())
+
+  (session-history ()))