Justfile

# SPDX-License-Identifier: MPL-2.0
# justfile - Academic Workflow Suite
# Academic workflow tools for research and publication management
set shell := ["bash", "-uc"]

import? "contractile.just"

project := "academic-workflow-suite"

# Show all recipes
default:
    @just --list --unsorted

# Build all components
build:
    just -f tasks/Justfile build

# Run all tests
test:
    just -f tasks/Justfile test

# Run all linters
lint:
    just -f tasks/Justfile lint

# Format all code
fmt:
    just -f tasks/Justfile format

# Start development environment
dev:
    just -f tasks/Justfile dev

# Clean all build artifacts
clean:
    just -f tasks/Justfile clean

# Install all components
install:
    just -f tasks/Justfile install

# Run CI pipeline locally
ci:
    just -f tasks/Justfile ci

# Validate RSR compliance
rsr-validate:
    just -f tasks/Justfile rsr-validate

# Show project statistics
stats:
    just -f tasks/Justfile stats

# Check dependencies
deps-check:
    just -f tasks/Justfile deps-check

# Security audit
security-audit:
    just -f tasks/Justfile security-audit

# All pre-commit checks
pre-commit: lint test
    @echo "All checks passed!"

# Synchronize A2ML metadata to SCM (Shadow Sync)
sync-metadata:
    #!/usr/bin/env bash
    echo "Synchronizing metadata (A2ML -> SCM)..."
    if [ -f .machine_readable/STATE.a2ml ]; then
        COMPLETION=$(grep "completion-percentage:" .machine_readable/STATE.a2ml | awk '{print $2}')
        sed -i "s/(overall-completion [0-9]\+)/(overall-completion $COMPLETION)/" .machine_readable/STATE.scm
        echo "✓ Metadata synchronized"
    fi

# Run panic-attacker pre-commit scan
assail:
    @command -v panic-attack >/dev/null 2>&1 && panic-attack assail . || echo "panic-attack not found — install from https://github.com/hyperpolymath/panic-attacker"

# ═══════════════════════════════════════════════════════════════════════════════
# ONBOARDING & DIAGNOSTICS
# ═══════════════════════════════════════════════════════════════════════════════

# Check all required toolchain dependencies and report health
doctor:
    #!/usr/bin/env bash
    echo "═══════════════════════════════════════════════════"
    echo "  Academic Workflow Suite Doctor — Toolchain Health Check"
    echo "═══════════════════════════════════════════════════"
    echo ""
    PASS=0; FAIL=0; WARN=0
    check() {
        local name="$1" cmd="$2" min="$3"
        if command -v "$cmd" >/dev/null 2>&1; then
            VER=$("$cmd" --version 2>&1 | head -1)
            echo "  [OK]   $name — $VER"
            PASS=$((PASS + 1))
        else
            echo "  [FAIL] $name — not found (need $min+)"
            FAIL=$((FAIL + 1))
        fi
    }
    check "just"              just      "1.25" 
    check "git"               git       "2.40" 
    check "Zig"               zig       "0.13" 
# Optional tools
if command -v panic-attack >/dev/null 2>&1; then
    echo "  [OK]   panic-attack — available"
    PASS=$((PASS + 1))
else
    echo "  [WARN] panic-attack — not found (pre-commit scanner)"
    WARN=$((WARN + 1))
fi
    echo ""
    echo "  Result: $PASS passed, $FAIL failed, $WARN warnings"
    if [ "$FAIL" -gt 0 ]; then
        echo "  Run 'just heal' to attempt automatic repair."
        exit 1
    fi
    echo "  All required tools present."

# Attempt to automatically install missing tools
heal:
    #!/usr/bin/env bash
    echo "═══════════════════════════════════════════════════"
    echo "  Academic Workflow Suite Heal — Automatic Tool Installation"
    echo "═══════════════════════════════════════════════════"
    echo ""
if ! command -v just >/dev/null 2>&1; then
    echo "Installing just..."
    cargo install just 2>/dev/null || echo "Install just from https://just.systems"
fi
    echo ""
    echo "Heal complete. Run 'just doctor' to verify."

# Guided tour of the project structure and key concepts
tour:
    #!/usr/bin/env bash
    echo "═══════════════════════════════════════════════════"
    echo "  Academic Workflow Suite — Guided Tour"
    echo "═══════════════════════════════════════════════════"
    echo ""
    echo '_                _                 _        __        __         _     __ _'
    echo ""
    echo "Key directories:"
    echo "  src/                      Source code" 
    echo "  ffi/                      Foreign function interface (Zig)" 
    echo "  src/abi/                  Idris2 ABI definitions" 
    echo "  docs/                     Documentation" 
    echo "  tests/                    Test suite" 
    echo "  .github/workflows/        CI/CD workflows" 
    echo "  contractiles/             Must/Trust/Dust contracts" 
    echo "  .machine_readable/        Machine-readable metadata" 
    echo "  examples/                 Usage examples" 
    echo ""
    echo "Quick commands:"
    echo "  just doctor    Check toolchain health"
    echo "  just heal      Fix missing tools"
    echo "  just help-me   Common workflows"
    echo "  just default   List all recipes"
    echo ""
    echo "Read more: README.adoc, EXPLAINME.adoc"

# Show help for common workflows
help-me:
    #!/usr/bin/env bash
    echo "═══════════════════════════════════════════════════"
    echo "  Academic Workflow Suite — Common Workflows"
    echo "═══════════════════════════════════════════════════"
    echo ""
echo "FIRST TIME SETUP:"
echo "  just doctor           Check toolchain"
echo "  just heal             Fix missing tools"
echo "" 
echo "PRE-COMMIT:"
echo "  just assail           Run panic-attacker scan"
echo ""
echo "LEARN:"
echo "  just tour             Guided project tour"
echo "  just default          List all recipes" 


# Print the current CRG grade (reads from READINESS.md '**Current Grade:** X' line)
crg-grade:
    @grade=$$(grep -oP '(?<=\*\*Current Grade:\*\* )[A-FX]' READINESS.md 2>/dev/null | head -1); \
    [ -z "$$grade" ] && grade="X"; \
    echo "$$grade"

# Generate a shields.io badge markdown for the current CRG grade
# Looks for '**Current Grade:** X' in READINESS.md; falls back to X
crg-badge:
    @grade=$$(grep -oP '(?<=\*\*Current Grade:\*\* )[A-FX]' READINESS.md 2>/dev/null | head -1); \
    [ -z "$$grade" ] && grade="X"; \
    case "$$grade" in \
      A) color="brightgreen" ;; B) color="green" ;; C) color="yellow" ;; \
      D) color="orange" ;; E) color="red" ;; F) color="critical" ;; \
      *) color="lightgrey" ;; esac; \
    echo "[![CRG $$grade](https://img.shields.io/badge/CRG-$$grade-$$color?style=flat-square)](https://github.com/hyperpolymath/standards/tree/main/component-readiness-grades)"