security: standardize secret scanning on TruffleHog (#33)

Standardizing on TruffleHog.

Author: hyperpolymath

.claude/CLAUDE.md

@@ -1,3 +1,7 @@
+<!--
+SPDX-License-Identifier: MPL-2.0
+Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
+-->
 # Formatrix Docs - Claude Code Instructions
 
 ## Project Overview

.github/CODEOWNERS

@@ -0,0 +1,34 @@
+# SPDX-License-Identifier: MPL-2.0
+# CODEOWNERS - Define code review assignments for GitHub
+# See: https://docs.github.com/en/repositories/managing-your-repositorys-settings-and-features/customizing-your-repository/about-code-owners
+
+# Default: sole maintainer for all files
+* @hyperpolymath
+
+# Security-sensitive files require explicit ownership
+SECURITY.md @hyperpolymath
+.github/workflows/ @hyperpolymath
+.machine_readable/ @hyperpolymath
+contractiles/ @hyperpolymath
+
+# License files
+LICENSE @hyperpolymath
+LICENSES/ @hyperpolymath
+
+# Configuration
+.gitignore @hyperpolymath
+.github/ @hyperpolymath
+
+# Documentation
+README* @hyperpolymath
+CONTRIBUTING* @hyperpolymath
+CODE_OF_CONDUCT* @hyperpolymath
+GOVERNANCE* @hyperpolymath
+MAINTAINERS* @hyperpolymath
+CHANGELOG* @hyperpolymath
+ROADMAP* @hyperpolymath
+
+# Build and CI
+Justfile @hyperpolymath
+Makefile @hyperpolymath
+*.sh @hyperpolymath

.github/copilot/coding-agent.yml

@@ -0,0 +1,6 @@
+mcp_servers:
+  boj-server:
+    command: npx
+    args: ["-y", "@hyperpolymath/boj-server@latest"]
+    env:
+      BOJ_URL: http://localhost:7700

.github/workflows/boj-build.yml

@@ -1,3 +1,4 @@
+# // Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
 # SPDX-License-Identifier: MPL-2.0
 name: BoJ Server Build Trigger
 on:
@@ -7,6 +8,7 @@ on:
 jobs:
   trigger-boj:
     runs-on: ubuntu-latest
+    timeout-minutes: 15
     steps:
       - name: Checkout
         uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7

.github/workflows/casket-pages.yml

@@ -1,39 +1,34 @@
+# // Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
 # SPDX-License-Identifier: MPL-2.0-or-later
 name: GitHub Pages
-
 on:
   push:
     branches: [main]
   workflow_dispatch:
-
 permissions:
   contents: read
   pages: write
   id-token: write
-
 concurrency:
   group: "pages"
   cancel-in-progress: false
-
 jobs:
   build:
     runs-on: ubuntu-latest
+    timeout-minutes: 15
     steps:
       - name: Checkout
         uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v4
-
       - name: Checkout casket-ssg
         uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v4
         with:
           repository: hyperpolymath/casket-ssg
           path: .casket-ssg
-
       - name: Setup GHCup
         uses: haskell-actions/setup@f9150cb1d140e9a9271700670baa38991e6fa25c # v2
         with:
           ghc-version: '9.8.2'
           cabal-version: '3.10'
-
       - name: Cache Cabal
         uses: actions/cache@668228422ae6a00e4ad889ee87cd7109ec5666a7 # v5.0.4
         with:
@@ -42,11 +37,9 @@ jobs:
             ~/.cabal/store
             .casket-ssg/dist-newstyle
           key: ${{ runner.os }}-casket-${{ hashFiles('.casket-ssg/casket-ssg.cabal') }}
-
       - name: Build casket-ssg
         working-directory: .casket-ssg
         run: cabal build
-
       - name: Build site
         run: |
           mkdir -p site _site
@@ -77,20 +70,18 @@ jobs:
             fi
           fi
           cd .casket-ssg && cabal run casket-ssg -- build ../site ../_site
-
       - name: Setup Pages
         uses: actions/configure-pages@983d7736d9b0ae728b81ab479565c72886d7745b # v5
-
       - name: Upload artifact
         uses: actions/upload-pages-artifact@7b1f4a764d45c48632c6b24a0339c27f5614fb0b # v4.0.0
         with:
           path: '_site'
-
   deploy:
     environment:
       name: github-pages
       url: ${{ steps.deployment.outputs.page_url }}
     runs-on: ubuntu-latest
+    timeout-minutes: 15
     needs: build
     steps:
       - name: Deploy to GitHub Pages

.github/workflows/cflite_batch.yml

@@ -1,3 +1,4 @@
+# // Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
 # SPDX-License-Identifier: MPL-2.0
 name: ClusterFuzzLite Batch
 on:
@@ -8,6 +9,7 @@ permissions:
 jobs:
   BatchFuzzing:
     runs-on: ubuntu-latest
+    timeout-minutes: 15
     strategy:
       fail-fast: false
       matrix:

.github/workflows/cflite_pr.yml

@@ -1,3 +1,4 @@
+# // Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
 # SPDX-License-Identifier: MPL-2.0
 name: ClusterFuzzLite PR
 on:
@@ -9,6 +10,7 @@ permissions:
 jobs:
   PR:
     runs-on: ubuntu-latest
+    timeout-minutes: 15
     strategy:
       fail-fast: false
       matrix:

.github/workflows/codeql.yml

@@ -1,28 +1,26 @@
-# SPDX-License-Identifier: PMPL-1.0
+# // Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
+# SPDX-License-Identifier: MPL-2.0
 name: CodeQL Security Analysis
-
 on:
   push:
     branches: [main, master]
   pull_request:
     branches: [main, master]
   schedule:
     - cron: '0 6 * * 1'
-
 # Estate guardrail: cancel superseded runs so re-pushes / rebased PR
 # updates do not pile up queued runs against the shared account-wide
 # Actions concurrency pool. Applied only to read-only check workflows
 # (no publish/mutation), so cancelling a superseded run is always safe.
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true
-
 permissions:
   contents: read
-
 jobs:
   analyze:
     runs-on: ubuntu-latest
+    timeout-minutes: 15
     permissions:
       contents: read
       security-events: write
@@ -32,17 +30,14 @@ jobs:
         include:
           - language: javascript-typescript
             build-mode: none
-
     steps:
       - name: Checkout
         uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
-
       - name: Initialize CodeQL
         uses: github/codeql-action/init@c6f931105cb2c34c8f901cc885ba1e2e259cf745 # v3
         with:
           languages: ${{ matrix.language }}
           build-mode: ${{ matrix.build-mode }}
-
       - name: Perform CodeQL Analysis
         uses: github/codeql-action/analyze@c6f931105cb2c34c8f901cc885ba1e2e259cf745 # v3
         with:

.github/workflows/dogfood-gate.yml

@@ -5,28 +5,24 @@
 # Validates that the repo uses hyperpolymath's own formats and tools.
 # Companion to static-analysis-gate.yml (security) — this is for format compliance.
 name: Dogfood Gate
-
 on:
   pull_request:
     branches: ['**']
   push:
     branches: [main, master]
-
 permissions:
   contents: read
-
 jobs:
   # ---------------------------------------------------------------------------
   # Job 1: A2ML manifest validation
   # ---------------------------------------------------------------------------
   a2ml-validate:
     name: Validate A2ML manifests
     runs-on: ubuntu-latest
-
+    timeout-minutes: 15
     steps:
       - name: Checkout repository
         uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4
-
       - name: Check for A2ML files
         id: detect
         run: |
@@ -35,14 +31,12 @@ jobs:
           if [ "$COUNT" -eq 0 ]; then
             echo "::warning::No .a2ml manifest files found. Every RSR repo should have 0-AI-MANIFEST.a2ml"
           fi
-
       - name: Validate A2ML manifests
         if: steps.detect.outputs.count > 0
         uses: hyperpolymath/a2ml-validate-action@6bff6ec134fc977e86d25166a5c522ddea5c1e78 # main
         with:
           path: '.'
           strict: 'false'
-
       - name: Write summary
         run: |
           A2ML_COUNT="${{ steps.detect.outputs.count }}"
@@ -59,18 +53,16 @@ jobs:
             echo "" >> "$GITHUB_STEP_SUMMARY"
             echo "Scanned **${A2ML_COUNT}** .a2ml file(s). See step output for details." >> "$GITHUB_STEP_SUMMARY"
           fi
-
   # ---------------------------------------------------------------------------
   # Job 2: K9 contract validation
   # ---------------------------------------------------------------------------
   k9-validate:
     name: Validate K9 contracts
     runs-on: ubuntu-latest
-
+    timeout-minutes: 15
     steps:
       - name: Checkout repository
         uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4
-
       - name: Check for K9 files
         id: detect
         run: |
@@ -83,14 +75,12 @@ jobs:
           if [ "$COUNT" -eq 0 ] && [ "$CONFIG_COUNT" -gt 0 ]; then
             echo "::warning::Found $CONFIG_COUNT config files but no K9 contracts. Run k9iser to generate contracts."
           fi
-
       - name: Validate K9 contracts
         if: steps.detect.outputs.k9_count > 0
         uses: hyperpolymath/k9-validate-action@2d96f43c538964b097d159ed3a56ba5b5ceca227 # main
         with:
           path: '.'
           strict: 'false'
-
       - name: Write summary
         run: |
           K9_COUNT="${{ steps.detect.outputs.k9_count }}"
@@ -108,18 +98,16 @@ jobs:
             echo "" >> "$GITHUB_STEP_SUMMARY"
             echo "Validated **${K9_COUNT}** K9 contract(s) against **${CFG_COUNT}** config file(s)." >> "$GITHUB_STEP_SUMMARY"
           fi
-
   # ---------------------------------------------------------------------------
   # Job 3: Empty-linter — invisible character detection
   # ---------------------------------------------------------------------------
   empty-lint:
     name: Empty-linter (invisible characters)
     runs-on: ubuntu-latest
-
+    timeout-minutes: 15
     steps:
       - name: Checkout repository
         uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4
-
       - name: Scan for invisible characters
         id: lint
         run: |
@@ -153,7 +141,6 @@ jobs:
             REL_PATH="${filepath#$GITHUB_WORKSPACE/}"
             echo "::warning file=${REL_PATH}::Invisible Unicode characters detected (zero-width space, BOM, NBSP, etc.)"
           done < /tmp/empty-lint-results.txt
-
       - name: Write summary
         run: |
           if [ "${{ steps.lint.outputs.ready }}" = "true" ]; then
@@ -172,18 +159,16 @@ jobs:
             echo "" >> "$GITHUB_STEP_SUMMARY"
             echo "Skipped: empty-linter not available." >> "$GITHUB_STEP_SUMMARY"
           fi
-
   # ---------------------------------------------------------------------------
   # Job 4: Groove manifest check (for repos that should expose services)
   # ---------------------------------------------------------------------------
   groove-check:
     name: Groove manifest check
     runs-on: ubuntu-latest
-
+    timeout-minutes: 15
     steps:
       - name: Checkout repository
         uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4
-
       - name: Check for Groove manifest
         id: groove
         run: |
@@ -220,7 +205,6 @@ jobs:
           if [ "$HAS_SERVER" = "true" ] && [ "$HAS_MANIFEST" = "false" ] && [ "$HAS_GROOVE_CODE" = "false" ]; then
             echo "::warning::This repo has server code but no Groove endpoint. Add .well-known/groove/manifest.json for service discovery."
           fi
-
       - name: Write summary
         run: |
           echo "## Groove Protocol Check" >> "$GITHUB_STEP_SUMMARY"
@@ -230,20 +214,18 @@ jobs:
           echo "| Static manifest (.well-known/groove/manifest.json) | ${{ steps.groove.outputs.has_manifest }} |" >> "$GITHUB_STEP_SUMMARY"
           echo "| Groove endpoint in code | ${{ steps.groove.outputs.has_groove_code }} |" >> "$GITHUB_STEP_SUMMARY"
           echo "| Has HTTP server code | ${{ steps.groove.outputs.has_server }} |" >> "$GITHUB_STEP_SUMMARY"
-
   # ---------------------------------------------------------------------------
   # Job 5: Dogfooding summary
   # ---------------------------------------------------------------------------
   dogfood-summary:
     name: Dogfooding compliance summary
     runs-on: ubuntu-latest
+    timeout-minutes: 15
     needs: [a2ml-validate, k9-validate, empty-lint, groove-check]
     if: always()
-
     steps:
       - name: Checkout repository
         uses: actions/checkout@34e114876b0b11c390a56381ad16ebd13914f8d5 # v4
-
       - name: Generate dogfooding scorecard
         run: |
           SCORE=0
@@ -306,4 +288,3 @@ jobs:
           *Generated by the [Dogfood Gate](https://github.com/hyperpolymath/rsr-template-repo) workflow.*
           *Dogfooding is guinea pig fooding — we test our tools on ourselves.*
           EOF
-