chore: preserve in-progress KRL Agda proofs (Properties -> GeneratorIndex + PortArity)

Preserves uncommitted work-in-progress found in the working tree from a prior
session: a refactor splitting verification/proofs/agda/Properties.agda into two
focused `agda --safe` proof modules:
- GeneratorIndex.agda (KRL generator-index validity)
- PortArity.agda (KRL port-arity proof)

Also gitignores compiled *.agdai build artifacts.

NOT authored or verified in this session — preserved as-is so it isn't lost in
the ephemeral container. It has NOT been checked to compile; a reviewer should
confirm `agda --safe` passes and that nothing still imports the removed
Properties.agda before merging.

https://claude.ai/code/session_017TXizM5c1Yd9HWf7Y15YH2

Author: claude

.gitignore

@@ -112,3 +112,4 @@ deps/
 .cache/
 build/
 dist/
+*.agdai

verification/proofs/agda/GeneratorIndex.agda

@@ -0,0 +1,59 @@
+{-# OPTIONS --safe #-}
+-- SPDX-License-Identifier: MPL-2.0
+-- Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) <j.d.a.jewell@open.ac.uk>
+--
+-- ===========================================================================
+-- KRL generator-index validity  —  machine-checked under `agda --safe`
+-- ===========================================================================
+--
+-- Discharges obligation KR-7 from PROOF-NEEDS.md (was "PARTIAL: error path
+-- exists, not property-tested"):
+--
+--   KR-7  `sigma N`, `sigma_inv N`, `cup N`, `cap N` are accepted iff N ≥ 1.
+--
+-- KRL generators are written with a 1-based strand index (spec/grammar.ebnf:
+-- `crossing_gen = "sigma" , integer`, etc.).  Index 0 names no strand pair
+-- and must be rejected at parse time.  This module gives the reference
+-- semantics of that check and proves it correct in both directions; the
+-- Julia parser is property-tested against the same invariant.
+
+module GeneratorIndex where
+
+open import Data.Nat using (ℕ; zero; suc; _≤_; s≤s; z≤n)
+open import Data.Maybe using (Maybe; just; nothing)
+open import Data.Product using (∃; _,_)
+open import Relation.Binary.PropositionalEquality using (_≡_; refl)
+
+-- A *validated* 1-based generator index: a number together with a proof it
+-- is at least 1.  This is the shape the parser must guarantee downstream.
+record Index : Set where
+  constructor idx
+  field
+    value : ℕ
+    valid : 1 ≤ value
+
+-- The parser's index check: accept iff the raw integer is ≥ 1.
+checkIndex : ℕ → Maybe Index
+checkIndex zero    = nothing
+checkIndex (suc n) = just (idx (suc n) (s≤s z≤n))
+
+-- ── KR-7, the two directions ───────────────────────────────────────────────
+
+-- completeness: every N ≥ 1 is accepted.
+accepts-iff-pos : ∀ {n} → 1 ≤ n → ∃ λ i → checkIndex n ≡ just i
+accepts-iff-pos {suc n} _ = idx (suc n) (s≤s z≤n) , refl
+
+-- soundness: anything accepted was ≥ 1.
+accepted-is-pos : ∀ {n i} → checkIndex n ≡ just i → 1 ≤ n
+accepted-is-pos {suc n} _ = s≤s z≤n
+accepted-is-pos {zero}  ()
+
+-- ── Concrete computational evidence ────────────────────────────────────────
+
+-- `sigma 0` (index 0) is rejected.
+rejects-zero : checkIndex 0 ≡ nothing
+rejects-zero = refl
+
+-- `sigma 1` (index 1) is accepted.
+accepts-one : checkIndex 1 ≡ just (idx 1 (s≤s z≤n))
+accepts-one = refl

verification/proofs/agda/PortArity.agda

@@ -0,0 +1,230 @@
+{-# OPTIONS --safe #-}
+-- SPDX-License-Identifier: MPL-2.0
+-- Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) <j.d.a.jewell@open.ac.uk>
+--
+-- ===========================================================================
+-- KRL port-arity proof  —  machine-checked under `agda --safe` (no unproven axioms)
+-- ===========================================================================
+--
+-- Discharges two obligations from PROOF-NEEDS.md / PROOF-NARRATIVE.md:
+--
+--   KR-1  `lower` is total on parseable programs
+--         (a parseable program never gets "stuck" in lowering; the only
+--          failure is a genuine arity mismatch reported cleanly as `nothing`).
+--
+--   KR-2  `lower` preserves port arity
+--         (every sub-expression `(compose a b)` is lowered only when
+--          out-ports(a) = in-ports(b), and the lowered TangleIR object has
+--          exactly the surface arity).
+--
+-- Modelled fragment — the CONSTRUCT + TRANSFORM + RESOLVE(close) fragment of
+-- KRL v0.1.0 (spec/grammar.ebnf): generators sigma / sigma_inv / cup / cap,
+-- sequential composition `;`, tensor `|`, the arity-preserving transforms
+-- mirror / simplify / normalise, and `close` (trace / closure).
+--
+-- Arity model — a *precise* refinement of ASSUMPTIONS A-KR-2.1 / A-KR-2.2.
+-- The narrative prose for `sigma` ("in=i, out=i+1 (and same arity in/out)")
+-- is internally contradictory and cannot be encoded as written; we take the
+-- standard PROP / oriented-Temperley-Lieb model, which honours the
+-- *consistent* part of the assumption (cup/cap exact; sigma arity-preserving):
+--
+--     sigma i, sigma_inv i : 2 → 2     (a crossing; in = out, per A-KR-2.1)
+--     cup i                : 0 → 2     (exactly A-KR-2.1)
+--     cap i                : 2 → 0     (exactly A-KR-2.1)
+--     a ; b   (compose)    : m → n     requires out(a) = in(b)
+--     a | b   (tensor)     : (mₐ+m_b) → (nₐ+n_b)   (exactly A-KR-2.2)
+--     mirror/simplify/normalise        : arity-preserving
+--     close                : n → n  ↦  0 → 0       (trace; requires square)
+--
+-- Validated against the canonical example from spec/grammar-overview.md,
+--     close (sigma 1 ; sigma 1 ; sigma 1)   -- the trefoil
+-- which is well-formed with closed arity 0 → 0 (see `trefoil-lowers` below).
+-- The strand index `i` is retained as data; KRL v0.1.0 has no strand-count
+-- parameterisation (grammar-overview "Known gaps" #3), so locally it does not
+-- constrain arity.  A future strand-indexed refinement is left open.
+--
+-- The RETRIEVE family (`find … where …` queries) and `classify` produce
+-- non-tangle results and are out of scope for the port-arity theorem.
+
+module PortArity where
+
+open import Data.Nat using (ℕ; zero; suc; _+_)
+open import Data.Nat.Properties using (_≟_; ≟-diag)
+open import Data.Maybe using (Maybe; just; nothing)
+open import Data.Product using (Σ; Σ-syntax; _×_; _,_; proj₁; proj₂)
+open import Data.Empty using (⊥-elim)
+open import Relation.Nullary using (yes; no)
+open import Relation.Binary.PropositionalEquality
+  using (_≡_; _≢_; refl; cong)
+
+-- ───────────────────────────────────────────────────────────────────────────
+-- Surface syntax: a *parseable* KRL tangle expression (untyped).
+-- ───────────────────────────────────────────────────────────────────────────
+
+data Expr : Set where
+  sigma sigmaInv cup cap          : ℕ → Expr
+  _⨾_ _⊗_                         : Expr → Expr → Expr   -- compose ; , tensor |
+  mirror simplify normalise close : Expr → Expr
+
+infixl 5 _⨾_
+infixl 6 _⊗_
+
+-- ───────────────────────────────────────────────────────────────────────────
+-- TangleIR: intrinsically port-typed.  `Tangle m n` is a tangle with m input
+-- ports and n output ports.  The `Kseq` constructor makes an arity-mismatched
+-- composition *unrepresentable* — this is KR-2 baked into the type of the IR.
+-- ───────────────────────────────────────────────────────────────────────────
+
+data Tangle : ℕ → ℕ → Set where
+  Kσ   : ℕ → Tangle 2 2
+  Kσ⁻  : ℕ → Tangle 2 2
+  K∪   : ℕ → Tangle 0 2
+  K∩   : ℕ → Tangle 2 0
+  Kseq : ∀ {m k n} → Tangle m k → Tangle k n → Tangle m n
+  Kpar : ∀ {m n p q} → Tangle m n → Tangle p q → Tangle (m + p) (n + q)
+  Kmir : ∀ {m n} → Tangle m n → Tangle m n
+  Ksim : ∀ {m n} → Tangle m n → Tangle m n
+  Knrm : ∀ {m n} → Tangle m n → Tangle m n
+  Kcls : ∀ {n} → Tangle n n → Tangle 0 0
+
+-- A lowered object packaged with its (input,output) arity.
+TypedTangle : Set
+TypedTangle = Σ[ mn ∈ ℕ × ℕ ] Tangle (proj₁ mn) (proj₂ mn)
+
+arity : ∀ {m n} → Tangle m n → ℕ × ℕ
+arity {m} {n} _ = m , n
+
+-- ───────────────────────────────────────────────────────────────────────────
+-- The lowering, in combinator style so the per-constructor equations hold
+-- definitionally (which keeps the proofs below clean).
+-- ───────────────────────────────────────────────────────────────────────────
+
+-- sequential composition: succeeds iff the middle arities agree
+seqC : TypedTangle → TypedTangle → Maybe TypedTangle
+seqC ((ma , ka) , ta) ((kb , nb) , tb) with ka ≟ kb
+... | yes refl = just ((ma , nb) , Kseq ta tb)
+... | no  _    = nothing
+
+-- tensor: always succeeds, arities add
+parC : TypedTangle → TypedTangle → Maybe TypedTangle
+parC ((ma , na) , ta) ((mb , nb) , tb) =
+  just ((ma + mb , na + nb) , Kpar ta tb)
+
+-- arity-preserving unary transform
+mapC : (∀ {m n} → Tangle m n → Tangle m n) → TypedTangle → TypedTangle
+mapC f (mn , t) = mn , f t
+
+-- closure / trace: succeeds iff the diagram is square (in = out)
+clsC : TypedTangle → Maybe TypedTangle
+clsC ((m , n) , t) with m ≟ n
+... | yes refl = just ((0 , 0) , Kcls t)
+... | no  _    = nothing
+
+-- binary / unary Maybe plumbing (propagates `nothing`)
+bind₂ : Maybe TypedTangle → Maybe TypedTangle →
+        (TypedTangle → TypedTangle → Maybe TypedTangle) → Maybe TypedTangle
+bind₂ (just x) (just y) f = f x y
+bind₂ _        _        _ = nothing
+
+mapMaybe : (TypedTangle → TypedTangle) → Maybe TypedTangle → Maybe TypedTangle
+mapMaybe f (just x) = just (f x)
+mapMaybe _ nothing  = nothing
+
+bind₁ : Maybe TypedTangle → (TypedTangle → Maybe TypedTangle) → Maybe TypedTangle
+bind₁ (just x) f = f x
+bind₁ nothing  _ = nothing
+
+-- The lowering function.  Total: structural recursion accepted by Agda's
+-- own totality checker under `--safe` (no escape hatches): this *is* the
+-- witness for KR-1.
+compile : Expr → Maybe TypedTangle
+compile (sigma i)     = just ((2 , 2) , Kσ  i)
+compile (sigmaInv i)  = just ((2 , 2) , Kσ⁻ i)
+compile (cup i)       = just ((0 , 2) , K∪  i)
+compile (cap i)       = just ((2 , 0) , K∩  i)
+compile (a ⨾ b)       = bind₂ (compile a) (compile b) seqC
+compile (a ⊗ b)       = bind₂ (compile a) (compile b) parC
+compile (mirror e)    = mapMaybe (mapC Kmir) (compile e)
+compile (simplify e)  = mapMaybe (mapC Ksim) (compile e)
+compile (normalise e) = mapMaybe (mapC Knrm) (compile e)
+compile (close e)     = bind₁ (compile e) clsC
+
+-- alias under the obligation's name
+lower : Expr → Maybe TypedTangle
+lower = compile
+
+-- ===========================================================================
+-- KR-2  —  port-arity preservation
+-- ===========================================================================
+
+-- (definitional) the lowered IR has exactly the arity `compile` reports.
+lower-preserves-arity :
+  ∀ e {mn} {t : Tangle (proj₁ mn) (proj₂ mn)} →
+  compile e ≡ just (mn , t) → arity t ≡ mn
+lower-preserves-arity _ _ = refl
+
+-- helper: `seqC` only fires when the middle arities are equal …
+seqC-nomatch :
+  ∀ {ma ka kb nb} (ta : Tangle ma ka) (tb : Tangle kb nb) →
+  ka ≢ kb → seqC ((ma , ka) , ta) ((kb , nb) , tb) ≡ nothing
+seqC-nomatch {_} {ka} {kb} ta tb ne with ka ≟ kb
+... | yes p = ⊥-elim (ne p)
+... | no  _ = refl
+
+-- (general) a composition is lowered only when out-ports(a) = in-ports(b);
+-- a genuine mismatch is rejected cleanly as `nothing`.
+compose-mismatch-rejected :
+  ∀ {a b ma ka kb nb} {ta : Tangle ma ka} {tb : Tangle kb nb} →
+  compile a ≡ just ((ma , ka) , ta) →
+  compile b ≡ just ((kb , nb) , tb) →
+  ka ≢ kb →
+  compile (a ⨾ b) ≡ nothing
+compose-mismatch-rejected pa pb ne
+  rewrite pa | pb = seqC-nomatch _ _ ne
+
+-- helper: `seqC` fires when the middle arities agree.
+seqC-match :
+  ∀ {ma k n} (ta : Tangle ma k) (tb : Tangle k n) →
+  seqC ((ma , k) , ta) ((k , n) , tb) ≡ just ((ma , n) , Kseq ta tb)
+seqC-match {_} {k} ta tb rewrite ≟-diag {k} {k} refl = refl
+
+-- ===========================================================================
+-- KR-1  —  lowering is total on parseable programs (no "stuck" states)
+-- ===========================================================================
+
+-- (general, positive) matching arities ⇒ the composition lowers, and the
+-- lowered IR is exactly the sequential composition of the parts.
+compose-succeeds-on-match :
+  ∀ {a b ma k n} (ta : Tangle ma k) (tb : Tangle k n) →
+  compile a ≡ just ((ma , k) , ta) →
+  compile b ≡ just ((k , n) , tb) →
+  compile (a ⨾ b) ≡ just ((ma , n) , Kseq ta tb)
+compose-succeeds-on-match ta tb pa pb
+  rewrite pa | pb = seqC-match ta tb
+
+-- ===========================================================================
+-- Concrete computational evidence (each is `refl` — `compile` actually runs)
+-- ===========================================================================
+
+-- the canonical trefoil  close (sigma 1 ; sigma 1 ; sigma 1)  lowers,
+-- with closed arity 0 → 0.
+trefoil : Expr
+trefoil = close ((sigma 1 ⨾ sigma 1) ⨾ sigma 1)
+
+trefoil-lowers :
+  compile trefoil
+    ≡ just ((0 , 0) , Kcls (Kseq (Kseq (Kσ 1) (Kσ 1)) (Kσ 1)))
+trefoil-lowers = refl
+
+-- tensor of two cups:  (0→2) | (0→2)  =  0 → 4
+two-cups : compile (cup 1 ⊗ cup 2) ≡ just ((0 , 4) , Kpar (K∪ 1) (K∪ 2))
+two-cups = refl
+
+-- a genuine arity mismatch — sigma (2→2) then cup (0→2), 2 ≠ 0 — is rejected
+-- as `nothing` (a clean error), never "stuck".
+mismatch-rejected : compile (sigma 1 ⨾ cup 1) ≡ nothing
+mismatch-rejected = refl
+
+-- a non-square diagram cannot be closed:  cup (0→2) has 0 ≠ 2, so `close` fails.
+close-needs-square : compile (close (cup 1)) ≡ nothing
+close-needs-square = refl