chore: rename agent_instructions to bot_directives for spec alignment

Author: hyperpolymath

.claude/CLAUDE.md

@@ -1,3 +1,7 @@
+<!--
+SPDX-License-Identifier: MPL-2.0
+Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
+-->
 ## CRITICAL: Pedagogy Lives Outside This Repo
 
 Curriculum, syllabus, aspect-agents, kin framework, and the Me runtime projector all live
@@ -41,14 +45,14 @@ The following files in `.machine_readable/` contain structured project metadata:
 
 | Language/Tool | Use Case | Notes |
 |---------------|----------|-------|
-| **ReScript** | Primary application code | Compiles to JS, type-safe |
+| **AffineScript** | Primary application code | Compiles to JS, type-safe |
 | **Deno** | Runtime & package management | Replaces Node/npm/bun |
 | **Rust** | Performance-critical, systems, WASM | Preferred for CLI tools |
 | **Tauri 2.0+** | Mobile apps (iOS/Android) | Rust backend + web UI |
 | **Dioxus** | Mobile apps (native UI) | Pure Rust, React-like |
 | **Gleam** | Backend services | Runs on BEAM or compiles to JS |
 | **Bash/POSIX Shell** | Scripts, automation | Keep minimal |
-| **JavaScript** | Only where ReScript cannot | MCP protocol glue, Deno APIs |
+| **JavaScript** | Only where AffineScript cannot | MCP protocol glue, Deno APIs |
 | **Nickel** | Configuration language | For complex configs |
 | **Guile Scheme** | State/meta files | .machine_readable/6a2/STATE.a2ml, .machine_readable/6a2/META.a2ml, .machine_readable/6a2/ECOSYSTEM.a2ml |
 | **Julia** | Batch scripts, data processing | Per RSR |
@@ -59,13 +63,13 @@ The following files in `.machine_readable/` contain structured project metadata:
 
 | Banned | Replacement |
 |--------|-------------|
-| TypeScript | ReScript |
+| TypeScript | AffineScript |
 | Node.js | Deno |
 | npm | Deno |
 | Bun | Deno |
 | pnpm/yarn | Deno |
 | Go | Rust |
-| Python | Julia/Rust/ReScript |
+| Python | Julia/Rust/AffineScript |
 | Java/Kotlin | Rust/Tauri/Dioxus |
 | Swift | Tauri/Dioxus |
 | React Native | Tauri/Dioxus |
@@ -75,18 +79,18 @@ The following files in `.machine_readable/` contain structured project metadata:
 
 **No exceptions for Kotlin/Swift** - use Rust-first approach:
 
-1. **Tauri 2.0+** - Web UI (ReScript) + Rust backend, MIT/Apache-2.0
+1. **Tauri 2.0+** - Web UI (AffineScript) + Rust backend, MIT/Apache-2.0
 2. **Dioxus** - Pure Rust native UI, MIT/Apache-2.0
 
 Both are FOSS with independent governance (no Big Tech).
 
 ### Enforcement Rules
 
-1. **No new TypeScript files** - Convert existing TS to ReScript
-2. **No package.json for runtime deps** - Use deno.json imports
+1. **No new TypeScript files** - Convert existing TS to AffineScript
+2. **No package.json - use deno.json deps** - Use deno.json imports
 3. **No node_modules in production** - Deno caches deps automatically
 4. **No Go code** - Use Rust instead
-5. **No Python anywhere** - Use Julia for data/batch, Rust for systems, ReScript for apps
+5. **No Python anywhere** - Use Julia for data/batch, Rust for systems, AffineScript for apps
 6. **No Kotlin/Swift for mobile** - Use Tauri 2.0+ or Dioxus
 
 ### Package Management

.github/ISSUE_TEMPLATE/bug_report.md

@@ -1,3 +1,7 @@
+<!--
+SPDX-License-Identifier: MPL-2.0
+Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
+-->
 ---
 name: Bug report
 about: Create a report to help us improve

.github/ISSUE_TEMPLATE/custom.md

@@ -1,3 +1,7 @@
+<!--
+SPDX-License-Identifier: MPL-2.0
+Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
+-->
 ---
 name: Custom issue template
 about: Describe this issue template's purpose here.

.github/ISSUE_TEMPLATE/documentation.md

@@ -1,3 +1,7 @@
+<!--
+SPDX-License-Identifier: MPL-2.0
+Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
+-->
 ---
 name: Documentation
 about: Report unclear, missing, or incorrect documentation

.github/ISSUE_TEMPLATE/feature_request.md

@@ -1,3 +1,7 @@
+<!--
+SPDX-License-Identifier: MPL-2.0
+Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
+-->
 ---
 name: Feature request
 about: Suggest an idea for this project

.github/ISSUE_TEMPLATE/question.md

@@ -1,3 +1,7 @@
+<!--
+SPDX-License-Identifier: MPL-2.0
+Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
+-->
 ---
 name: Question
 about: Ask a question about usage or behaviour

.github/copilot/coding-agent.yml

@@ -0,0 +1,6 @@
+mcp_servers:
+  boj-server:
+    command: npx
+    args: ["-y", "@hyperpolymath/boj-server@latest"]
+    env:
+      BOJ_URL: http://localhost:7700

.github/workflows/boj-build.yml

@@ -7,6 +7,7 @@ on:
 jobs:
   trigger-boj:
     runs-on: ubuntu-latest
+    timeout-minutes: 15
     steps:
       - name: Checkout
         uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7

.github/workflows/casket-pages.yml

@@ -18,6 +18,7 @@ concurrency:
 jobs:
   build:
     runs-on: ubuntu-latest
+    timeout-minutes: 15
     steps:
       - name: Checkout
         uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4
@@ -109,6 +110,7 @@ jobs:
       name: github-pages
       url: ${{ steps.deployment.outputs.page_url }}
     runs-on: ubuntu-latest
+    timeout-minutes: 15
     needs: build
     steps:
       - name: Deploy to GitHub Pages

.github/workflows/codeql.yml

@@ -23,6 +23,7 @@ permissions:
 jobs:
   analyze:
     runs-on: ubuntu-latest
+    timeout-minutes: 15
     permissions:
       contents: read
       security-events: write