fix(ci): sync hypatia-scan.yml to canonical

[hyperpolymath]

Replaces the drifted hypatia-scan.yml (older cd scanner/hypatia-v2 build-step that exits 1 — the env.HOME/Phase-2 sweeps never touched it) with the canonical rsr-template-repo workflow. Estate drift remediation; see hyperpolymath/neurophone#41.

🤖 Generated with Claude Code

[github-actions]

Dependency Review

✅ No vulnerabilities or license issues or OpenSSF Scorecard issues found.

OpenSSF Scorecard

Package	Version	Score	Details
actions/actions/checkout	de0fac2e4500dabe0009e67214ff5f5447ce83dd	🟢 5.7	Details Check Score Reason Maintained ⚠️ 0 1 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 0 Binary-Artifacts 🟢 10 no binaries found in the repo Code-Review 🟢 10 all changesets reviewed Dangerous-Workflow 🟢 10 no dangerous workflow patterns detected CII-Best-Practices ⚠️ 0 no effort to earn an OpenSSF best practices badge detected Token-Permissions ⚠️ 0 detected GitHub workflow tokens with excessive permissions Pinned-Dependencies 🟢 3 dependency not pinned by hash detected -- score normalized to 3 Packaging ⚠️ -1 packaging workflow not detected License 🟢 10 license file detected Fuzzing ⚠️ 0 project is not fuzzed Signed-Releases ⚠️ -1 no releases found Security-Policy 🟢 9 security policy file detected Branch-Protection 🟢 5 branch protection is not maximal on development and all release branches SAST 🟢 8 SAST tool detected but not run on all commits
actions/actions/github-script	ed597411d8f924073f98dfc5c65a23a2325f34cd	🟢 7.8	Details Check Score Reason Code-Review 🟢 10 all changesets reviewed Maintained 🟢 10 21 commit(s) and 0 issue activity found in the last 90 days -- score normalized to 10 Packaging ⚠️ -1 packaging workflow not detected Binary-Artifacts 🟢 10 no binaries found in the repo Dangerous-Workflow 🟢 10 no dangerous workflow patterns detected CII-Best-Practices ⚠️ 0 no effort to earn an OpenSSF best practices badge detected Token-Permissions 🟢 9 detected GitHub workflow tokens with excessive permissions Pinned-Dependencies ⚠️ 1 dependency not pinned by hash detected -- score normalized to 1 Fuzzing ⚠️ 0 project is not fuzzed License 🟢 10 license file detected Signed-Releases ⚠️ -1 no releases found Security-Policy 🟢 9 security policy file detected SAST 🟢 10 SAST tool is run on all commits Branch-Protection 🟢 6 branch protection is not maximal on development and all release branches
actions/erlef/setup-beam	fc68ffb90438ef2936bbb3251622353b3dcb2f93	🟢 5.9	Details Check Score Reason Code-Review ⚠️ 1 Found 4/21 approved changesets -- score normalized to 1 Binary-Artifacts 🟢 10 no binaries found in the repo Packaging ⚠️ -1 packaging workflow not detected Dangerous-Workflow 🟢 10 no dangerous workflow patterns detected Maintained 🟢 10 30 commit(s) and 4 issue activity found in the last 90 days -- score normalized to 10 CII-Best-Practices ⚠️ 0 no effort to earn an OpenSSF best practices badge detected Token-Permissions ⚠️ 0 detected GitHub workflow tokens with excessive permissions Pinned-Dependencies 🟢 3 dependency not pinned by hash detected -- score normalized to 3 License 🟢 10 license file detected Fuzzing ⚠️ 0 project is not fuzzed Signed-Releases ⚠️ -1 no releases found Branch-Protection ⚠️ -1 internal error: error during branchesHandler.setup: internal error: some github tokens can't read classic branch protection rules: https://github.com/ossf/scorecard-action/blob/main/docs/authentication/fine-grained-auth-token.md Security-Policy 🟢 10 security policy file detected SAST 🟢 7 SAST tool is not run on all commits -- score normalized to 7
actions/github/codeql-action/upload-sarif	0d579ffd059c29b07949a3cce3983f0780820c98	Unknown	Unknown

Scanned Files

• .github/workflows/hypatia-scan.yml

[github-advanced-security]

You are seeing this message because GitHub Code Scanning has recently been set up for this repository, or this pull request contains the workflow file for the Code Scanning tool.

What Enabling Code Scanning Means:

• The 'Security' tab will display more code scanning analysis results (e.g., for the default branch).
• Depending on your configuration and choice of analysis tool, future pull requests will be annotated with code scanning analysis results.
• You will be able to see the analysis results for the pull request's branch on this overview once the scans have completed and the checks have passed.

For more information about GitHub Code Scanning, check out the documentation.

[github-actions]

🔍 Hypatia Security Scan

Findings: 10 issues detected

Severity	Count
🔴 Critical	0
🟠 High	7
🟡 Medium	3

View findings

[
  {
    "reason": "Issue in quality.yml",
    "type": "missing_workflow",
    "file": "quality.yml",
    "action": "create",
    "rule_module": "workflow_audit",
    "severity": "high"
  },
  {
    "reason": "Issue in security-policy.yml",
    "type": "missing_workflow",
    "file": "security-policy.yml",
    "action": "create",
    "rule_module": "workflow_audit",
    "severity": "medium"
  },
  {
    "reason": "Action hyperpolymath/standards/.github/workflows/governance-reusable.yml@main needs attention",
    "type": "unpinned_action",
    "file": "governance.yml",
    "action": "pin_sha",
    "rule_module": "workflow_audit",
    "severity": "high"
  },
  {
    "reason": "Workflow executes remote script directly (curl/wget piped to shell). Download, verify checksum/signature, then execute.",
    "type": "download_then_run",
    "file": "mirror.yml",
    "action": "verify_download_integrity",
    "rule_module": "workflow_audit",
    "severity": "high"
  },
  {
    "reason": "codeql.yml lists `language: javascript-typescript` but the repo has no source files in any CodeQL-scannable language. The analyze job will exit 'no source files' on every run. Switch the matrix to `actions` (which scans workflow files — every repo has those).",
    "type": "codeql_language_matrix_mismatch",
    "file": "codeql.yml",
    "action": "switch_codeql_matrix_to_actions",
    "rule_module": "workflow_audit",
    "severity": "high"
  },
  {
    "reason": "codeql.yml lists `language: python` but the repo has no source files in any CodeQL-scannable language. The analyze job will exit 'no source files' on every run. Switch the matrix to `actions` (which scans workflow files — every repo has those).",
    "type": "codeql_language_matrix_mismatch",
    "file": "codeql.yml",
    "action": "switch_codeql_matrix_to_actions",
    "rule_module": "workflow_audit",
    "severity": "high"
  },
  {
    "reason": "codeql.yml lists `language: go` but the repo has no source files in any CodeQL-scannable language. The analyze job will exit 'no source files' on every run. Switch the matrix to `actions` (which scans workflow files — every repo has those).",
    "type": "codeql_language_matrix_mismatch",
    "file": "codeql.yml",
    "action": "switch_codeql_matrix_to_actions",
    "rule_module": "workflow_audit",
    "severity": "high"
  },
  {
    "reason": "Download-and-execute pattern (curl|wget pipe to shell) -- verify integrity before execution (3 occurrences, CWE-494)",
    "type": "shell_download_then_run",
    "file": "/home/runner/work/refugia/refugia/setup.sh",
    "action": "flag",
    "rule_module": "code_safety",
    "severity": "high"
  },
  {
    "reason": "Nominal-only SAST in refugia: codeql.yml language matrix contains no language present in the repo and lacks `actions`, so CodeQL records zero results on every commit. Remediation: set the CodeQL matrix to `language: actions`.",
    "type": "StaticAnalysis",
    "file": "/home/runner/work/refugia/refugia",
    "action": "auto_fix",
    "rule_module": "scorecard",
    "severity": "medium",
    "remediation": "Add CodeQL or equivalent SAST workflow.",
    "scorecard_check": "SAST"
  },
  {
    "reason": "Repository has 1 non-main remote branch(es). Policy: single main branch only.",
    "type": "GS007",
    "file": ".",
    "action": "delete_remote_branches",
    "rule_module": "git_state",
    "severity": "medium"
  }
]

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