security: standardize secret scanning on TruffleHog

.claude/CLAUDE.md

@@ -1,3 +1,7 @@
+<!--
+SPDX-License-Identifier: MPL-2.0
+Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
+-->
 ## Machine-Readable Artefacts
 
 The following files in `.machine_readable/` contain structured project metadata:
@@ -43,7 +47,7 @@ The following files in `.machine_readable/` contain structured project metadata:
 | Bun | Deno |
 | pnpm/yarn | Deno |
 | Go | Rust |
-| Python | Julia/Rust/ReScript |
+| Python | Julia/Rust/AffineScript |
 | Java/Kotlin | Rust/Tauri/Dioxus |
 | Swift | Tauri/Dioxus |
 | React Native | Tauri/Dioxus |
@@ -61,7 +65,7 @@ Both are FOSS with independent governance (no Big Tech).
 ### Enforcement Rules
 
 1. **No new TypeScript files** - Convert existing TS to AffineScript
-2. **No package.json for runtime deps** - Use deno.json imports
+2. **No package.json - use deno.json deps** - Use deno.json imports
 3. **No node_modules in production** - Deno caches deps automatically
 4. **No Go code** - Use Rust instead
 5. **No Python anywhere** - Use Julia for data/batch, Rust for systems, AffineScript for apps

.github/CODEOWNERS

@@ -0,0 +1,34 @@
+# SPDX-License-Identifier: MPL-2.0
+# CODEOWNERS - Define code review assignments for GitHub
+# See: https://docs.github.com/en/repositories/managing-your-repositorys-settings-and-features/customizing-your-repository/about-code-owners
+
+# Default: sole maintainer for all files
+* @hyperpolymath
+
+# Security-sensitive files require explicit ownership
+SECURITY.md @hyperpolymath
+.github/workflows/ @hyperpolymath
+.machine_readable/ @hyperpolymath
+contractiles/ @hyperpolymath
+
+# License files
+LICENSE @hyperpolymath
+LICENSES/ @hyperpolymath
+
+# Configuration
+.gitignore @hyperpolymath
+.github/ @hyperpolymath
+
+# Documentation
+README* @hyperpolymath
+CONTRIBUTING* @hyperpolymath
+CODE_OF_CONDUCT* @hyperpolymath
+GOVERNANCE* @hyperpolymath
+MAINTAINERS* @hyperpolymath
+CHANGELOG* @hyperpolymath
+ROADMAP* @hyperpolymath
+
+# Build and CI
+Justfile @hyperpolymath
+Makefile @hyperpolymath
+*.sh @hyperpolymath

.github/ISSUE_TEMPLATE/bug_report.md

@@ -1,3 +1,7 @@
+<!--
+SPDX-License-Identifier: MPL-2.0
+Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
+-->
 ---
 name: Bug report
 about: Create a report to help us improve

.github/ISSUE_TEMPLATE/custom.md

@@ -1,3 +1,7 @@
+<!--
+SPDX-License-Identifier: MPL-2.0
+Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
+-->
 ---
 name: Custom issue template
 about: Describe this issue template's purpose here.

.github/ISSUE_TEMPLATE/documentation.md

@@ -1,3 +1,7 @@
+<!--
+SPDX-License-Identifier: MPL-2.0
+Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
+-->
 ---
 name: Documentation
 about: Report unclear, missing, or incorrect documentation

.github/ISSUE_TEMPLATE/feature_request.md

@@ -1,3 +1,7 @@
+<!--
+SPDX-License-Identifier: MPL-2.0
+Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
+-->
 ---
 name: Feature request
 about: Suggest an idea for this project

.github/ISSUE_TEMPLATE/question.md

@@ -1,3 +1,7 @@
+<!--
+SPDX-License-Identifier: MPL-2.0
+Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
+-->
 ---
 name: Question
 about: Ask a question about usage or behaviour

.github/TEST_CI_SHA.md

@@ -0,0 +1,7 @@
+# CI TEST: Hypatia SHA update
+# SPDX-License-Identifier: MPL-2.0
+# Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
+
+Test commit to verify Hypatia SHA update from 915139d7 to 6cd37728.
+
+DELETE AFTER VERIFICATION.

.github/copilot/coding-agent.yml

@@ -0,0 +1,6 @@
+mcp_servers:
+  boj-server:
+    command: npx
+    args: ["-y", "@hyperpolymath/boj-server@latest"]
+    env:
+      BOJ_URL: http://localhost:7700

.github/workflows/ci.yml

@@ -1,3 +1,4 @@
+# // Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
 # SPDX-License-Identifier: MPL-2.0
 # GitHub Actions CI/CD for SafeBruteForce
 # Erlang/OTP + LFE project
@@ -26,6 +27,7 @@ jobs:
   build:
     name: Build
     runs-on: ubuntu-latest
+    timeout-minutes: 10
 
     steps:
       - name: Checkout code
@@ -66,6 +68,7 @@ jobs:
   test:
     name: Test (OTP ${{ matrix.otp }})
     runs-on: ubuntu-latest
+    timeout-minutes: 10
     needs: build
 
     strategy:
@@ -106,6 +109,7 @@ jobs:
   coverage:
     name: Test Coverage
     runs-on: ubuntu-latest
+    timeout-minutes: 10
     needs: build
 
     steps:
@@ -143,6 +147,7 @@ jobs:
   dialyzer:
     name: Dialyzer Static Analysis
     runs-on: ubuntu-latest
+    timeout-minutes: 10
     needs: build
 
     steps:
@@ -179,6 +184,7 @@ jobs:
   security:
     name: Security Checks
     runs-on: ubuntu-latest
+    timeout-minutes: 10
 
     steps:
       - name: Checkout code
@@ -210,6 +216,7 @@ jobs:
   rsr-compliance:
     name: RSR Framework Compliance
     runs-on: ubuntu-latest
+    timeout-minutes: 10
 
     steps:
       - name: Checkout code
@@ -270,6 +277,7 @@ jobs:
   docs:
     name: Build Documentation
     runs-on: ubuntu-latest
+    timeout-minutes: 10
     needs: build
 
     steps:
@@ -305,6 +313,7 @@ jobs:
   release:
     name: Create Release
     runs-on: ubuntu-latest
+    timeout-minutes: 10
     needs: [test, coverage, security, rsr-compliance]
     if: startsWith(github.ref, 'refs/tags/v')
 
@@ -339,6 +348,7 @@ jobs:
   notify:
     name: Notify on Failure
     runs-on: ubuntu-latest
+    timeout-minutes: 10
     needs: [test, coverage, security, rsr-compliance]
     if: failure()
 

.github/workflows/codeql.yml

@@ -1,3 +1,4 @@
+# // Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
 # SPDX-License-Identifier: MPL-2.0
 # For most projects, this workflow file will not need changing; you simply need
 # to commit it to your repository.
@@ -31,6 +32,7 @@ jobs:
     #   - https://gh.io/using-larger-runners (GitHub.com only)
     # Consider using larger runners or machines with greater resources for possible analysis time improvements.
     runs-on: ${{ (matrix.language == 'swift' && 'macos-latest') || 'ubuntu-latest' }}
+    timeout-minutes: 10
     permissions:
       # required for all workflows
       security-events: write

.github/workflows/dependabot-automerge.yml

@@ -1,3 +1,4 @@
+# // Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
 # SPDX-License-Identifier: MPL-2.0
 #
 # dependabot-automerge.yml — enable GitHub's native auto-merge on
@@ -35,29 +36,25 @@
 # bumps for dependabot/fetch-metadata flow through the same path.
 
 name: Dependabot Auto-Merge
-
 on:
   pull_request:
     types: [opened, reopened, synchronize]
-
 permissions:
-  contents: write        # needed to enable auto-merge
-  pull-requests: write   # needed to approve
+  contents: write # needed to enable auto-merge
+  pull-requests: write # needed to approve
   # NB: keep narrow — do NOT add secrets: read or id-token: write here.
-
 jobs:
   automerge:
     # Only run for PRs actually authored by Dependabot.
     if: github.actor == 'dependabot[bot]' && github.event.pull_request.user.login == 'dependabot[bot]'
     runs-on: ubuntu-latest
-
+    timeout-minutes: 15
     steps:
       - name: Fetch Dependabot metadata
         id: meta
         uses: dependabot/fetch-metadata@25dd0e34f4fe68f24cc83900b1fe3fe149efef98 # v3.1.0
         with:
           github-token: ${{ secrets.GITHUB_TOKEN }}
-
       # --- Policy gate -------------------------------------------------------
       # Outputs from fetch-metadata we care about:
       #   update-type      → version-update:semver-{patch,minor,major}
@@ -106,7 +103,6 @@ jobs:
           echo "security=$is_security" >> "$GITHUB_OUTPUT"
           echo "update_type=$UPDATE_TYPE" >> "$GITHUB_OUTPUT"
           echo "ghsa=$GHSA_ID" >> "$GITHUB_OUTPUT"
-
       - name: Approve PR (if policy allows)
         if: steps.policy.outputs.action == 'automerge'
         env:
@@ -115,15 +111,13 @@ jobs:
         run: |
           gh pr review --approve "$PR_URL" \
             --body "Auto-approving Dependabot security update (${{ steps.policy.outputs.ghsa }}, ${{ steps.policy.outputs.update_type }}). Policy: low/moderate security patches/minors only."
-
       - name: Enable auto-merge (if policy allows)
         if: steps.policy.outputs.action == 'automerge'
         env:
           GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}
           PR_URL: ${{ github.event.pull_request.html_url }}
         run: |
           gh pr merge --auto --squash "$PR_URL"
-
       - name: Write decision to step summary
         env:
           ACTION: ${{ steps.policy.outputs.action }}

.github/workflows/governance.yml

@@ -1,3 +1,4 @@
+# // Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
 # SPDX-License-Identifier: MPL-2.0
 # governance.yml — single wrapper calling the shared estate governance bundle
 # in hyperpolymath/standards instead of carrying per-repo copies.
@@ -11,24 +12,21 @@
 # (rust-ci, codeql, dependabot, release, scan/mirror/pages plumbing).
 
 name: Governance
-
 on:
   push:
     branches: [main, master]
   pull_request:
   workflow_dispatch:
-
 # Estate guardrail: cancel superseded runs so re-pushes / rebased PR
 # updates do not pile up queued runs against the shared account-wide
 # Actions concurrency pool. Applied only to read-only check workflows
 # (no publish/mutation), so cancelling a superseded run is always safe.
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true
-
 permissions:
   contents: read
-
 jobs:
   governance:
-    uses: hyperpolymath/standards/.github/workflows/governance-reusable.yml@main
+    uses: hyperpolymath/standards/.github/workflows/governance-reusable.yml@861b5e911d9e5dcfb3c0ab3dd2a9a3c8fd0a1613
+    timeout-minutes: 10

.github/workflows/hypatia-scan.yml

@@ -1,9 +1,9 @@
+# // Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
 # SPDX-License-Identifier: MPL-2.0
 # Thin wrapper around hyperpolymath/standards hypatia-scan-reusable.yml.
 # See standards#191 for the reusable's purpose and design.
 
 name: Hypatia Security Scan
-
 on:
   push:
     branches: [main, master, develop]
@@ -12,18 +12,16 @@ on:
   schedule:
     - cron: '0 0 * * 0'
   workflow_dispatch:
-
 # Estate guardrail: cancel superseded runs so re-pushes don't pile up.
 concurrency:
   group: ${{ github.workflow }}-${{ github.ref }}
   cancel-in-progress: true
-
 permissions:
   contents: read
   security-events: write
   pull-requests: write
-
 jobs:
   hypatia:
-    uses: hyperpolymath/standards/.github/workflows/hypatia-scan-reusable.yml@915139d73560e65a8240b8fc7768698658502c89
+    uses: hyperpolymath/standards/.github/workflows/hypatia-scan-reusable.yml@6cd3772824e59c8c9affeab66061e25383544242
+    timeout-minutes: 10
     secrets: inherit

.github/workflows/instant-sync.yml

@@ -1,19 +1,18 @@
+# // Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
 # SPDX-License-Identifier: MPL-2.0
 # Instant Forge Sync - Triggers propagation to all forges on push/release
 name: Instant Sync
-
 on:
   push:
     branches: [main, master]
   release:
     types: [published]
-
 permissions:
   contents: read
-
 jobs:
   dispatch:
     runs-on: ubuntu-latest
+    timeout-minutes: 15
     steps:
       - name: Trigger Propagation
         uses: peter-evans/repository-dispatch@28959ce8df70de7be546dd1250a005dd32156697 # v4.0.1
@@ -28,6 +27,5 @@ jobs:
               "sha": "${{ github.sha }}",
               "forges": ""
             }
-
       - name: Confirm
         run: echo "::notice::Propagation triggered for ${{ github.event.repository.name }}"