chore: reconcile repository identity to snifs (Phase-2 WP-2) (#44)

hyperpolymath · claude · web-flow · commit e9cba18d8554 · 2026-06-16T20:40:12.000+01:00
**Phase-2 WP-2** — repository-identity reconciliation (`snif`-singular / `rsr-template-repo` → `snifs`). Cut from fresh `origin/main`; disjoint from #42, #43. 20 files: `.github/settings.yml` (name/homepage — the probot/settings sync source), the 6 `.github/ISSUE_TEMPLATE/*` + `SUPPORT`, `.well-known/security.txt`, `container/manifest.toml` + `Containerfile`, `STATE.a2ml`/`META.a2ml`/`groove.a2ml`/`compliance/reuse/dep5`, `TEST-NEEDS.md` + `llm-warmup-{dev,user}.md` titles, a filled `docs/attribution/CITATIONS.adoc` (from `CITATION.cff`), and filled copyright placeholders in `copilot-instructions.md`. **Preserved deliberately:** the `snif-` crate prefix and `snif.pdf` filename, the methodology-guard reject-patterns, and `dogfood-gate.yml`'s legitimate pointers to the real `rsr-template-repo`. **Deferred / flagged (not here):** - `docs/whitepapers/academic/snif.tex` — two `\url{}` point at `hyperpolymath/snif`; it's the published, DOI'd paper, so the URL fix + PDF rebuild + re-deposit is a deliberate owner action. - Other `{{PLACEHOLDER}}` tokens in the `container/` / `security.txt` / `dep5` templates (`SERVICE_NAME`, `PORT`, `SECURITY_EMAIL`, …) — a separate fill task, not identity. - D-a-gated bootstrap tooling (`scripts/validate-template.sh`, `setup.sh`, the self-validating `k9` examples) — awaits the keep-or-remove decision. - `llm-warmup-*.md` are thin boilerplate (reference the phantom `just setup`) — name fixed; content refresh is separate. 🤖 Generated with [Claude Code](https://claude.com/claude-code) Co-authored-by: Claude Opus 4.8 (1M context) <noreply@anthropic.com>
diff --git a/.github/ISSUE_TEMPLATE/bug_report.yml b/.github/ISSUE_TEMPLATE/bug_report.yml
@@ -1,5 +1,5 @@
 # SPDX-License-Identifier: MPL-2.0
-# Bug report issue template for hyperpolymath/snif
+# Bug report issue template for hyperpolymath/snifs
 name: Bug Report
 description: Create a report to help us improve
 title: "[Bug]: "
diff --git a/.github/ISSUE_TEMPLATE/config.yml b/.github/ISSUE_TEMPLATE/config.yml
@@ -1,10 +1,10 @@
 # SPDX-License-Identifier: MPL-2.0
-# Issue template chooser configuration for hyperpolymath/snif
+# Issue template chooser configuration for hyperpolymath/snifs
 blank_issues_enabled: true
 contact_links:
   - name: Discussions
-    url: https://github.com/hyperpolymath/snif/discussions
+    url: https://github.com/hyperpolymath/snifs/discussions
     about: Ask questions, share ideas, or start a conversation in Discussions.
   - name: Security Vulnerabilities
-    url: https://github.com/hyperpolymath/snif/security/advisories/new
+    url: https://github.com/hyperpolymath/snifs/security/advisories/new
     about: Report security vulnerabilities privately via GitHub Security Advisories.
diff --git a/.github/ISSUE_TEMPLATE/custom.yml b/.github/ISSUE_TEMPLATE/custom.yml
@@ -1,5 +1,5 @@
 # SPDX-License-Identifier: MPL-2.0
-# Custom issue template for hyperpolymath/snif
+# Custom issue template for hyperpolymath/snifs
 name: Other
 description: Report an issue that does not fit the other categories
 title: ""
diff --git a/.github/ISSUE_TEMPLATE/documentation.yml b/.github/ISSUE_TEMPLATE/documentation.yml
@@ -1,5 +1,5 @@
 # SPDX-License-Identifier: MPL-2.0
-# Documentation issue template for hyperpolymath/snif
+# Documentation issue template for hyperpolymath/snifs
 name: Documentation
 description: Report unclear, missing, or incorrect documentation
 title: "[Docs]: "
diff --git a/.github/ISSUE_TEMPLATE/feature_request.yml b/.github/ISSUE_TEMPLATE/feature_request.yml
@@ -1,5 +1,5 @@
 # SPDX-License-Identifier: MPL-2.0
-# Feature request issue template for hyperpolymath/snif
+# Feature request issue template for hyperpolymath/snifs
 name: Feature Request
 description: Suggest an idea or enhancement for this project
 title: "[Feature]: "
diff --git a/.github/ISSUE_TEMPLATE/question.yml b/.github/ISSUE_TEMPLATE/question.yml
@@ -1,5 +1,5 @@
 # SPDX-License-Identifier: MPL-2.0
-# Question issue template for hyperpolymath/snif
+# Question issue template for hyperpolymath/snifs
 name: Question
 description: Ask a question about usage or behaviour
 title: "[Question]: "
@@ -10,7 +10,7 @@ body:
     attributes:
       value: |
         Have a question? You can also ask in
-        [Discussions](https://github.com/hyperpolymath/snif/discussions)
+        [Discussions](https://github.com/hyperpolymath/snifs/discussions)
         for broader conversations.
 
   - type: textarea
diff --git a/.github/SUPPORT b/.github/SUPPORT
@@ -2,6 +2,6 @@
 
 For questions, help, and community discussion:
 
-- GitHub Discussions: https://github.com/hyperpolymath/snif/discussions
-- GitHub Issues: https://github.com/hyperpolymath/snif/issues
+- GitHub Discussions: https://github.com/hyperpolymath/snifs/discussions
+- GitHub Issues: https://github.com/hyperpolymath/snifs/issues
 - Documentation: See README.adoc in the root directory.
diff --git a/.github/copilot-instructions.md b/.github/copilot-instructions.md
@@ -2,7 +2,7 @@
 SPDX-License-Identifier: MPL-2.0
 Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
 -->
-<!-- Copyright (c) {{CURRENT_YEAR}} {{AUTHOR}} (hyperpolymath) <{{AUTHOR_EMAIL}}> -->
+<!-- Copyright (c) 2026 Jonathan D.A. Jewell (hyperpolymath) <j.d.a.jewell@open.ac.uk> -->
 <!-- Authoritative source: docs/AI-CONVENTIONS.md -->
 
 # Copilot Instructions
@@ -16,7 +16,7 @@ Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
 
 - SPDX: `MPL-2.0` on all new files.
 - Never use AGPL-3.0.
-- Copyright: `{{AUTHOR}} (hyperpolymath) <{{AUTHOR_EMAIL}}>`
+- Copyright: `Jonathan D.A. Jewell (hyperpolymath) <j.d.a.jewell@open.ac.uk>`
 
 ## Code Style
 
diff --git a/.github/settings.yml b/.github/settings.yml
@@ -12,9 +12,9 @@
 # ─── Repository Settings ───────────────────────────────────────────────────────
 
 repository:
-  name: "snif"
+  name: "snifs"
   description: "{{DESCRIPTION}}"
-  homepage: "https://github.com/hyperpolymath/snif"
+  homepage: "https://github.com/hyperpolymath/snifs"
   private: false
   has_issues: true
   has_projects: true
diff --git a/.machine_readable/META.a2ml b/.machine_readable/META.a2ml
@@ -2,7 +2,7 @@
 ;; META.a2ml — snif meta
 
 (meta
-  (project "snif")
+  (project "snifs")
   (full-name "SNIFs: Safer Native Implemented Functions for the BEAM via WebAssembly Sandboxing")
   (license "MPL-2.0")
   (author "Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>")
diff --git a/.machine_readable/STATE.a2ml b/.machine_readable/STATE.a2ml
@@ -3,7 +3,7 @@
 
 (state
   (metadata
-    (project "snif")
+    (project "snifs")
     (version "0.1.0")
     (date "2026-04-11")
     (status "paper-ready"))
@@ -29,6 +29,6 @@
 
   (critical-next-actions
     (action "pdflatex docs/whitepapers/academic/snif.tex")
-    (action "gh repo create hyperpolymath/snif --public")
+    (action "gh repo create hyperpolymath/snifs --public")
     (action "git push origin main")
     (action "zenodo deposit with DOI")))
diff --git a/.machine_readable/compliance/reuse/dep5 b/.machine_readable/compliance/reuse/dep5
@@ -1,7 +1,7 @@
 Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
 Upstream-Name: {{PROJECT_NAME}}
 Upstream-Contact: {{AUTHOR}} <{{AUTHOR_EMAIL}}>
-Source: https://github.com/hyperpolymath/snif
+Source: https://github.com/hyperpolymath/snifs
 
 # Default: all files are MPL-2.0
 Files: *
diff --git a/.machine_readable/integrations/groove.a2ml b/.machine_readable/integrations/groove.a2ml
@@ -10,7 +10,7 @@
   (version "1.0")
 
   ; Service identity — replace snif with your project name
-  (service "snif")
+  (service "snifs")
   (service-version "0.1.0")
 
   ; Primary port — MUST be unique across the ecosystem.
diff --git a/.well-known/security.txt b/.well-known/security.txt
@@ -6,6 +6,6 @@ Contact: mailto:{{SECURITY_EMAIL}}
 Expires: {{CURRENT_YEAR}}-12-31T23:59:59.000Z
 Encryption: {{PGP_KEY_URL}}
 Preferred-Languages: en
-Canonical: https://github.com/hyperpolymath/snif/.well-known/security.txt
-Policy: https://github.com/hyperpolymath/snif/blob/main/SECURITY.md
+Canonical: https://github.com/hyperpolymath/snifs/.well-known/security.txt
+Policy: https://github.com/hyperpolymath/snifs/blob/main/SECURITY.md
 Hiring: https://{{WEBSITE}}/careers
diff --git a/TEST-NEEDS.md b/TEST-NEEDS.md
@@ -2,7 +2,7 @@
 SPDX-License-Identifier: MPL-2.0
 Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
 -->
-# TEST-NEEDS: rsr-template-repo
+# TEST-NEEDS: snifs
 
 ## CRG Grade: C — ACHIEVED 2026-04-04
 
diff --git a/container/Containerfile b/container/Containerfile
@@ -71,8 +71,8 @@ FROM cgr.dev/chainguard/wolfi-base:latest
 # OCI image labels (compatible with cerro-torre .ctp bundle metadata)
 LABEL org.opencontainers.image.title="{{PROJECT_NAME}}" \
       org.opencontainers.image.description="{{PROJECT_DESCRIPTION}}" \
-      org.opencontainers.image.url="https://github.com/hyperpolymath/snif" \
-      org.opencontainers.image.source="https://github.com/hyperpolymath/snif" \
+      org.opencontainers.image.url="https://github.com/hyperpolymath/snifs" \
+      org.opencontainers.image.source="https://github.com/hyperpolymath/snifs" \
       org.opencontainers.image.vendor="hyperpolymath" \
       org.opencontainers.image.licenses="{{LICENSE}}" \
       org.opencontainers.image.authors="{{AUTHOR}} <{{AUTHOR_EMAIL}}>" \
diff --git a/container/manifest.toml b/container/manifest.toml
@@ -16,11 +16,11 @@ cerro-torre .ctp bundle with Ed25519 signing and full provenance
 tracking.
 """
 license = "{{LICENSE}}"
-homepage = "https://github.com/hyperpolymath/snif"
+homepage = "https://github.com/hyperpolymath/snifs"
 maintainer = "{{AUTHOR}} <{{EMAIL}}>"
 
 [provenance]
-upstream = "https://github.com/hyperpolymath/snif"
+upstream = "https://github.com/hyperpolymath/snifs"
 import_date = {{CURRENT_DATE}}T00:00:00Z
 
 [dependencies]
diff --git a/docs/attribution/CITATIONS.adoc b/docs/attribution/CITATIONS.adoc
@@ -1,36 +1,40 @@
 // SPDX-License-Identifier: MPL-2.0
 // Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
-= {{PROJECT_NAME}} - Citation Guide
+= snifs — Citation Guide
 :toc:
 
+If you use this work, please cite it. The canonical machine-readable record is
+link:CITATION.cff[CITATION.cff] (DOI `10.5281/zenodo.19520245`).
+
 == BibTeX
 
 [source,bibtex]
 ----
-@software{{{PROJECT_NAME}}_{{CURRENT_YEAR}},
-  author = {{{AUTHOR_LAST}}, {{AUTHOR_FIRST}}},
-  title = {{{PROJECT_NAME}}},
-  year = {{{CURRENT_YEAR}}},
-  url = {https://github.com/hyperpolymath/{{PROJECT_NAME}}},
+@software{snifs_2026,
+  author  = {Jewell, Jonathan D. A.},
+  title   = {SNIFs: Safer Native Implemented Functions for the BEAM via WebAssembly Sandboxing},
+  year    = {2026},
+  url     = {https://github.com/hyperpolymath/snifs},
+  doi     = {10.5281/zenodo.19520245},
   license = {MPL-2.0}
 }
 ----
 
 == Harvard Style
 
-{{AUTHOR_LAST}}, {{AUTHOR_INITIALS}} ({{CURRENT_YEAR}}) _{{PROJECT_NAME}}_ [Computer software]. Available at: https://github.com/hyperpolymath/{{PROJECT_NAME}}
+Jewell, J.D.A. (2026) _SNIFs: Safer Native Implemented Functions for the BEAM via WebAssembly Sandboxing_ [Computer software]. Available at: https://github.com/hyperpolymath/snifs
 
 == OSCOLA
 
-{{AUTHOR}}, '{{PROJECT_NAME}}' ({{CURRENT_YEAR}}) <https://github.com/hyperpolymath/{{PROJECT_NAME}}>
+Jonathan D. A. Jewell, 'SNIFs: Safer Native Implemented Functions for the BEAM via WebAssembly Sandboxing' (2026) <https://github.com/hyperpolymath/snifs>
 
 == MLA
 
-{{AUTHOR_LAST}}, {{AUTHOR_FIRST}} "{{PROJECT_NAME}}." {{CURRENT_YEAR}}, github.com/hyperpolymath/{{PROJECT_NAME}}.
+Jewell, Jonathan D. A. "SNIFs: Safer Native Implemented Functions for the BEAM via WebAssembly Sandboxing." 2026, github.com/hyperpolymath/snifs.
 
 == APA 7
 
-{{AUTHOR_LAST}}, {{AUTHOR_INITIALS}} ({{CURRENT_YEAR}}). _{{PROJECT_NAME}}_ [Computer software]. GitHub. https://github.com/hyperpolymath/{{PROJECT_NAME}}
+Jewell, J. D. A. (2026). _SNIFs: Safer Native Implemented Functions for the BEAM via WebAssembly Sandboxing_ [Computer software]. GitHub. https://github.com/hyperpolymath/snifs
 
 == See Also
 
diff --git a/llm-warmup-dev.md b/llm-warmup-dev.md
@@ -2,9 +2,9 @@
 SPDX-License-Identifier: MPL-2.0
 Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
 -->
-# LLM Warmup — rsr-template-repo (Developer)
+# LLM Warmup — snifs (Developer)
 
-## What is rsr-template-repo?
+## What is snifs?
 See README.adoc for overview.
 
 ## Key Commands
diff --git a/llm-warmup-user.md b/llm-warmup-user.md
@@ -2,9 +2,9 @@
 SPDX-License-Identifier: MPL-2.0
 Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
 -->
-# LLM Warmup — rsr-template-repo (User)
+# LLM Warmup — snifs (User)
 
-## What is rsr-template-repo?
+## What is snifs?
 See README.adoc for overview.
 
 ## Key Commands
