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chore(ci): convert hypatia-scan.yml to wrapper of standards reusable (#18)
* chore(ci): convert hypatia-scan.yml to thin wrapper of standards reusable Replaces ~416 lines of duplicated Hypatia scan plumbing with a 29-line wrapper calling hyperpolymath/standards/.github/workflows/hypatia-scan-reusable.yml at SHA 2569c10e831e293f9dd6580d82a494aca039deee (standards#191 HEAD). Behaviour-preserving: same triggers, same concurrency group, same permissions, same secrets passthrough. Refs standards#191. * chore(ci): retarget hypatia-scan wrapper to standards#193 HEAD Standards #191 was closed in favour of #193 (parallel-session implementation with simpler API: zero inputs except runs-on). Repointing the wrapper at #193 HEAD 97df762107501909f50bb770e9bc200b6c415600 so it picks up the merged reusable once #193 lands. Refs standards#193.
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.github/workflows/hypatia-scan.yml

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# SPDX-License-Identifier: MPL-2.0
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# Hypatia Neurosymbolic CI/CD Security Scan
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# Thin wrapper around hyperpolymath/standards hypatia-scan-reusable.yml.
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# See standards#191 for the reusable's purpose and design.
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name: Hypatia Security Scan
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on:
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push:
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branches: [ main, master, develop ]
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branches: [main, master, develop]
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pull_request:
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branches: [ main, master ]
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branches: [main, master]
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schedule:
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- cron: '0 0 * * 0' # Weekly on Sunday
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- cron: '0 0 * * 0'
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workflow_dispatch:
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# Estate guardrail: cancel superseded runs so re-pushes don't pile up.
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concurrency:
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group: ${{ github.workflow }}-${{ github.ref }}
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cancel-in-progress: true
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permissions:
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contents: read
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# security-events: read lets the built-in GITHUB_TOKEN query this
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# repo\'s own Dependabot alerts via the Hypatia DependabotAlerts rule.
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security-events: read
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security-events: write
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pull-requests: write
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jobs:
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scan:
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name: Hypatia Neurosymbolic Analysis
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runs-on: ubuntu-latest
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steps:
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- name: Checkout repository
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uses: actions/checkout@de0fac2e4500dabe0009e67214ff5f5447ce83dd # v6.0.2
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with:
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fetch-depth: 0 # Full history for better pattern analysis
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- name: Setup Elixir for Hypatia scanner
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id: beam
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continue-on-error: true
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uses: erlef/setup-beam@e6d7c94229049569db56a7ad5a540c051a010af9 # v1.18.2
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with:
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elixir-version: '1.19.4'
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otp-version: '28.3'
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# Upstream hyperpolymath/hypatia was refactored to shell entrypoints;
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# it no longer has a scanner/ subdir. Build the escript at the repo
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# root only if no prebuilt binary exists, and never hard-fail on a
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# missing/unbuildable scanner — mirrors the resilient pattern in
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# static-analysis-gate.yml so a tooling outage cannot block merges.
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- name: Clone and build Hypatia
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id: build
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continue-on-error: true
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run: |
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git clone https://github.com/hyperpolymath/hypatia.git "$HOME/hypatia" 2>/dev/null || true
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if [ -f "$HOME/hypatia/mix.exs" ]; then
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cd "$HOME/hypatia"
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if [ ! -f hypatia ] && [ ! -f hypatia-v2 ]; then
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mix deps.get
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mix escript.build
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fi
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echo "ready=true" >> "$GITHUB_OUTPUT"
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else
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echo "::notice::Hypatia scanner not available — skipping scan"
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echo "ready=false" >> "$GITHUB_OUTPUT"
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fi
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- name: Run Hypatia scan
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id: scan
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if: steps.build.outputs.ready == 'true'
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run: |
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echo "Scanning repository: ${{ github.repository }}"
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set +e
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HYPATIA_FORMAT=json "$HOME/hypatia/hypatia-cli.sh" scan . > hypatia-findings.json 2>&1
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set -e
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# Sanitize: ensure valid JSON array even if the scanner errored.
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if [ ! -s hypatia-findings.json ] || ! jq empty hypatia-findings.json 2>/dev/null; then
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echo "[]" > hypatia-findings.json
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fi
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FINDING_COUNT=$(jq '. | length' hypatia-findings.json 2>/dev/null || echo 0)
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CRITICAL=$(jq '[.[] | select(.severity == "critical")] | length' hypatia-findings.json 2>/dev/null || echo 0)
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HIGH=$(jq '[.[] | select(.severity == "high")] | length' hypatia-findings.json 2>/dev/null || echo 0)
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MEDIUM=$(jq '[.[] | select(.severity == "medium")] | length' hypatia-findings.json 2>/dev/null || echo 0)
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echo "findings_count=$FINDING_COUNT" >> $GITHUB_OUTPUT
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echo "critical=$CRITICAL" >> $GITHUB_OUTPUT
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echo "high=$HIGH" >> $GITHUB_OUTPUT
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echo "medium=$MEDIUM" >> $GITHUB_OUTPUT
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echo "## Hypatia Scan Results" >> $GITHUB_STEP_SUMMARY
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echo "- Total findings: $FINDING_COUNT" >> $GITHUB_STEP_SUMMARY
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echo "- Critical: $CRITICAL" >> $GITHUB_STEP_SUMMARY
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echo "- High: $HIGH" >> $GITHUB_STEP_SUMMARY
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echo "- Medium: $MEDIUM" >> $GITHUB_STEP_SUMMARY
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- name: Create stub findings (when Hypatia unavailable)
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if: steps.build.outputs.ready != 'true'
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run: |
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echo "[]" > hypatia-findings.json
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{
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echo "## Hypatia Scan"
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echo ""
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echo "Skipped: Hypatia scanner not available in this environment."
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} >> "$GITHUB_STEP_SUMMARY"
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- name: Upload findings artifact
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uses: actions/upload-artifact@ea165f8d65b6e75b540449e92b4886f43607fa02 # v4
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with:
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name: hypatia-findings
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path: hypatia-findings.json
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retention-days: 90
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- name: Submit findings to gitbot-fleet (Phase 2)
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if: steps.scan.outputs.findings_count > 0
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# Phase 2 is the collaborative LEARNING side-channel ("bots share
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# findings via gitbot-fleet"), not the security gate. The gate is
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# the baseline-aware "Check for critical or high-severity issues"
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# step below. A fleet-side regression (e.g. the submit script being
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# moved/removed) must NEVER hard-fail every consuming repo's scan.
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# Same reasoning as the "Comment on PR with findings" step.
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# See hyperpolymath/hypatia#213 (gate decoupling) and the exit-127
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# estate-wide breakage when gitbot-fleet/scripts/submit-finding.sh
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# no longer existed on the default branch.
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continue-on-error: true
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env:
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# All GitHub context values surface as env vars so the run
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# block never interpolates `${{ … }}` inline (closes the
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# workflow_audit/unsafe_curl_payload + actions_expression_injection
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# findings).
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GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }}
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FLEET_PUSH_TOKEN: ${{ secrets.HYPATIA_DISPATCH_PAT }}
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FLEET_DISPATCH_TOKEN: ${{ secrets.HYPATIA_DISPATCH_PAT }}
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GITHUB_REPOSITORY: ${{ github.repository }}
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GITHUB_SHA: ${{ github.sha }}
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FINDINGS_COUNT: ${{ steps.scan.outputs.findings_count }}
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run: |
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echo "📤 Submitting $FINDINGS_COUNT findings to gitbot-fleet..."
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# Clone gitbot-fleet to temp directory. A clone failure (network,
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# repo gone) is non-fatal: learning submission is best-effort.
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FLEET_DIR="/tmp/gitbot-fleet-$$"
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if ! git clone --depth 1 https://github.com/hyperpolymath/gitbot-fleet.git "$FLEET_DIR"; then
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echo "::warning::Could not clone gitbot-fleet — skipping Phase 2 learning submission (non-fatal)."
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exit 0
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fi
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# The submission script's location in gitbot-fleet has drifted
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# before (it was absent from the default branch, which exit-127'd
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# every consuming repo's scan). Probe known locations rather than
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# hard-coding one path, and skip gracefully if none is present.
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SUBMIT_SCRIPT=""
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for cand in \
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"$FLEET_DIR/scripts/submit-finding.sh" \
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"$FLEET_DIR/scripts/submit_finding.sh" \
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"$FLEET_DIR/bin/submit-finding.sh" \
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"$FLEET_DIR/submit-finding.sh"; do
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if [ -f "$cand" ]; then
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SUBMIT_SCRIPT="$cand"
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break
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fi
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done
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if [ -z "$SUBMIT_SCRIPT" ]; then
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echo "::warning::gitbot-fleet submit-finding script not found at any known path — skipping Phase 2 learning submission (non-fatal). Findings are still uploaded as an artifact and gated below."
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rm -rf "$FLEET_DIR"
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exit 0
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fi
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# Run submission script. Pass the findings path as ABSOLUTE —
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# the script cd's into its own working dir before reading the
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# file, so a relative path would resolve to the wrong place.
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# A submission-script failure is logged but non-fatal.
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if bash "$SUBMIT_SCRIPT" "$GITHUB_WORKSPACE/hypatia-findings.json"; then
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echo "✅ Finding submission complete"
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else
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echo "::warning::gitbot-fleet submission script exited non-zero — Phase 2 learning submission skipped (non-fatal)."
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fi
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# Cleanup
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rm -rf "$FLEET_DIR"
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- name: Check for critical issues
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if: steps.scan.outputs.critical > 0
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run: |
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echo "⚠️ Critical security issues found!"
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echo "Review hypatia-findings.json for details"
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# Don't fail the build yet - just warn
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# exit 1
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- name: Generate scan report
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run: |
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cat << EOF > hypatia-report.md
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# Hypatia Security Scan Report
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**Repository:** ${{ github.repository }}
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**Scan Date:** $(date -u +"%Y-%m-%d %H:%M:%S UTC")
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**Commit:** ${{ github.sha }}
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## Summary
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| Severity | Count |
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|----------|-------|
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| Critical | ${{ steps.scan.outputs.critical }} |
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| High | ${{ steps.scan.outputs.high }} |
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| Medium | ${{ steps.scan.outputs.medium }} |
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| **Total**| ${{ steps.scan.outputs.findings_count }} |
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## Next Steps
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1. Review findings in the artifact: hypatia-findings.json
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2. Auto-fixable issues will be addressed by robot-repo-automaton (Phase 3)
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3. Manual review required for complex issues
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## Learning
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These findings feed Hypatia's learning engine to improve future rules.
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---
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*Powered by [Hypatia](https://github.com/hyperpolymath/hypatia) - Neurosymbolic CI/CD Intelligence*
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EOF
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cat hypatia-report.md >> $GITHUB_STEP_SUMMARY
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- name: Comment on PR with findings
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if: github.event_name == 'pull_request' && steps.scan.outputs.findings_count > 0
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uses: actions/github-script@ed597411d8f924073f98dfc5c65a23a2325f34cd # v7
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with:
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script: |
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const fs = require('fs');
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const findings = JSON.parse(fs.readFileSync('hypatia-findings.json', 'utf8'));
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const critical = findings.filter(f => f.severity === 'critical').length;
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const high = findings.filter(f => f.severity === 'high').length;
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let comment = `## 🔍 Hypatia Security Scan\n\n`;
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comment += `**Findings:** ${findings.length} issues detected\n\n`;
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comment += `| Severity | Count |\n|----------|-------|\n`;
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comment += `| 🔴 Critical | ${critical} |\n`;
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comment += `| 🟠 High | ${high} |\n`;
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comment += `| 🟡 Medium | ${findings.length - critical - high} |\n\n`;
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if (critical > 0) {
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comment += `⚠️ **Action Required:** Critical security issues found!\n\n`;
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}
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comment += `<details><summary>View findings</summary>\n\n`;
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comment += `\`\`\`json\n${JSON.stringify(findings.slice(0, 10), null, 2)}\n\`\`\`\n`;
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comment += `</details>\n\n`;
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comment += `*Powered by Hypatia Neurosymbolic CI/CD Intelligence*`;
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github.rest.issues.createComment({
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owner: context.repo.owner,
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repo: context.repo.repo,
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issue_number: context.issue.number,
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body: comment
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});
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hypatia:
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uses: hyperpolymath/standards/.github/workflows/hypatia-scan-reusable.yml@97df762107501909f50bb770e9bc200b6c415600
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secrets: inherit

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