security: standardize secret scanning on TruffleHog (#76)

Standardizing on TruffleHog.

Author: hyperpolymath

.claude/CLAUDE.md

@@ -1,4 +1,7 @@
-<!-- SPDX-License-Identifier: MPL-2.0 -->
+<!--
+SPDX-License-Identifier: MPL-2.0
+Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
+-->
 ## Machine-Readable Artefacts
 
 The following files in `.machine_readable/` contain structured project metadata:
@@ -44,7 +47,7 @@ The following files in `.machine_readable/` contain structured project metadata:
 | Bun | Deno |
 | pnpm/yarn | Deno |
 | Go | Rust |
-| Python | Julia/Rust/ReScript |
+| Python | Julia/Rust/AffineScript |
 | Java/Kotlin | Rust/Tauri/Dioxus |
 | Swift | Tauri/Dioxus |
 | React Native | Tauri/Dioxus |
@@ -62,7 +65,7 @@ Both are FOSS with independent governance (no Big Tech).
 ### Enforcement Rules
 
 1. **No new TypeScript files** - Convert existing TS to AffineScript
-2. **No package.json for runtime deps** - Use deno.json imports
+2. **No package.json - use deno.json deps** - Use deno.json imports
 3. **No node_modules in production** - Deno caches deps automatically
 4. **No Go code** - Use Rust instead
 5. **No Python anywhere** - Use Julia for data/batch, Rust for systems, AffineScript for apps

.github/CODEOWNERS

@@ -0,0 +1,34 @@
+# SPDX-License-Identifier: MPL-2.0
+# CODEOWNERS - Define code review assignments for GitHub
+# See: https://docs.github.com/en/repositories/managing-your-repositorys-settings-and-features/customizing-your-repository/about-code-owners
+
+# Default: sole maintainer for all files
+* @hyperpolymath
+
+# Security-sensitive files require explicit ownership
+SECURITY.md @hyperpolymath
+.github/workflows/ @hyperpolymath
+.machine_readable/ @hyperpolymath
+contractiles/ @hyperpolymath
+
+# License files
+LICENSE @hyperpolymath
+LICENSES/ @hyperpolymath
+
+# Configuration
+.gitignore @hyperpolymath
+.github/ @hyperpolymath
+
+# Documentation
+README* @hyperpolymath
+CONTRIBUTING* @hyperpolymath
+CODE_OF_CONDUCT* @hyperpolymath
+GOVERNANCE* @hyperpolymath
+MAINTAINERS* @hyperpolymath
+CHANGELOG* @hyperpolymath
+ROADMAP* @hyperpolymath
+
+# Build and CI
+Justfile @hyperpolymath
+Makefile @hyperpolymath
+*.sh @hyperpolymath

.github/ISSUE_TEMPLATE/bug_report.md

@@ -1,3 +1,7 @@
+<!--
+SPDX-License-Identifier: MPL-2.0
+Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
+-->
 ---
 name: Bug report
 about: Create a report to help us improve

.github/ISSUE_TEMPLATE/documentation.md

@@ -1,3 +1,7 @@
+<!--
+SPDX-License-Identifier: MPL-2.0
+Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
+-->
 ---
 name: Documentation
 about: Report unclear, missing, or incorrect documentation

.github/ISSUE_TEMPLATE/feature_request.md

@@ -1,3 +1,7 @@
+<!--
+SPDX-License-Identifier: MPL-2.0
+Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
+-->
 ---
 name: Feature request
 about: Suggest an idea for this project

.github/ISSUE_TEMPLATE/question.md

@@ -1,3 +1,7 @@
+<!--
+SPDX-License-Identifier: MPL-2.0
+Copyright (c) Jonathan D.A. Jewell <j.d.a.jewell@open.ac.uk>
+-->
 ---
 name: Question
 about: Ask a question about usage or behaviour

.github/copilot/coding-agent.yml

@@ -0,0 +1,6 @@
+mcp_servers:
+  boj-server:
+    command: npx
+    args: ["-y", "@hyperpolymath/boj-server@latest"]
+    env:
+      BOJ_URL: http://localhost:7700

.github/workflows/boj-build.yml

@@ -7,6 +7,7 @@ on:
 jobs:
   trigger-boj:
     runs-on: ubuntu-latest
+    timeout-minutes: 15
     steps:
       - name: Checkout
         uses: actions/checkout@692973e3d937129bcbf40652eb9f2f61becf3332 # v4.1.7

.github/workflows/cargo-audit.yml

@@ -1,7 +1,6 @@
 # SPDX-License-Identifier: MPL-2.0
 # Prevention workflow - audits Rust dependencies for vulnerabilities
 name: Cargo Audit
-
 on:
   push:
     branches: [main]
@@ -13,35 +12,30 @@ on:
       - '**/Cargo.toml'
       - '**/Cargo.lock'
   schedule:
-    - cron: '0 6 * * 1'  # Weekly on Monday
-
+    - cron: '0 6 * * 1' # Weekly on Monday
 permissions: read-all
-
 jobs:
   audit:
     runs-on: ubuntu-latest
+    timeout-minutes: 15
     steps:
       - uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4
-
       - name: Install cargo-audit
         run: cargo install cargo-audit --locked
-
       - name: Run cargo audit
         run: cargo audit --deny warnings
-
       - name: Check for unmaintained crates
         run: cargo audit --deny unmaintained
-
   # Optional: Create issues for vulnerabilities
   create-issue:
     runs-on: ubuntu-latest
+    timeout-minutes: 15
     needs: audit
     if: failure()
     permissions:
       issues: write
     steps:
       - uses: actions/checkout@b4ffde65f46336ab88eb53be808477a3936bae11 # v4
-
       - name: Create vulnerability issue
         env:
           GH_TOKEN: ${{ secrets.GITHUB_TOKEN }}

.github/workflows/cflite_batch.yml

@@ -4,12 +4,11 @@ on:
   schedule:
     - cron: '0 3 * * 0'
   workflow_dispatch:
-
 permissions: read-all
-
 jobs:
   BatchFuzzing:
     runs-on: ubuntu-latest
+    timeout-minutes: 15
     strategy:
       fail-fast: false
       matrix:
@@ -21,7 +20,6 @@ jobs:
         with:
           language: rust
           sanitizer: ${{ matrix.sanitizer }}
-
       - name: Run Fuzzers (${{ matrix.sanitizer }})
         id: run
         uses: google/clusterfuzzlite/actions/run_fuzzers@884713a6c30a92e5e8544c39945cd7cb630abcd1 # v1