IAM.AMR.MODEL.TEMPLATE.FOOD.ana

{ Analytica Model iAM_AMR_MOD_FOOD, encoding="UTF-8" }
SoftwareVersion 6.4.8


{ System Variables with non-default values: }
SampleSize := 1000
TypeChecking := 1
Checking := 1
SaveOptions := 2
SaveValues := 0

DisplayInputs Object: Index locale, Index microbe, Index medium, Index period, Index resistance
{!-50299|DiagramColor Model: 65535,65535,65535}
{!-50299|DiagramColor Module: 65535,65535,65535}
{!-50299|DiagramColor LinkModule: 65535,65535,65535}
{!-50299|DiagramColor Library: 65535,65535,65535}
{!-50299|DiagramColor LinkLibrary: 65535,65535,65535}
{!-50299|DiagramColor Form: 65535,65535,65535}
DisplayInputs Variable: Index locale, Index microbe, Index medium, Index period, Index resistance
DisplayInputs Chance: Object Index, Index locale, Index microbe, Index medium, Index period, Index resistance
DisplayOutputs Index: Object Chance
NodeInfo FormNode: 1,0,0,1,0,0,0,,0,1,,0,0
NodeColor Text: 65535,65535,65535

{!-60000|Attribute AcpStyles}
Attribute sourceref
Title: Reference

Attribute Link
Title: Link

Attribute Default
Title: Default

Attribute More
Title: More

Attribute nodenote
Title: Note


AskAttribute sourceref,Function,Yes
AskAttribute Link,Function,Yes
AskAttribute Default,Function,Yes
AskAttribute More,Function,Yes
AskAttribute nodenote,Function,Yes
AskAttribute sourceref,Module,Yes
AskAttribute Link,Module,Yes
AskAttribute Default,Module,Yes
AskAttribute More,Module,Yes
AskAttribute nodenote,Module,Yes
AskAttribute TableCellDefault,Variable,Yes
AskAttribute sourceref,Variable,Yes
AskAttribute Link,Variable,Yes
AskAttribute Default,Variable,Yes
AskAttribute More,Variable,Yes
AskAttribute nodenote,Variable,Yes

Model iAM_AMR_MOD_FOOD
Title: iAM.AMR.MODEL.TEMPLATE.FOOD
Author: Brennan Chapman
Date: Tue, Aug 22, 2017 12:24 PM
DefaultSize: 48,24
DiagState: 2,35,26,1847,939,17,10
DiagramColor: 65535,65535,65535
FontStyle: Arial,13
FileInfo: 0,Model iAM_AMR_MOD_FOOD,2,2,0,0,C:\IAM.AMR.MODEL.TEMPLATE.FOOD.ana
OutlinerState: 2,772,45,450,600

Index locale
Att_PrevIndexValue: ['Atlantis','Themyscira ']
Title: Locale
Description: The locale(s) included in the model.
Definition: ['Atlantis','Themyscira ']
NodeLocation: 264,96,1
NodeSize: 64,24
NodeInfo: 1,,0,,0
NodeColor: 1,19662,39321
DisplayOutputs: Object Object, Object Variable, Object Chance
NodeFontColor: 65535,65535,65535

Index microbe
Att_PrevIndexValue: ['Microbe A','Microbe B']
Title: Microbe
Description: The microbe(s) included in the model.
Definition: ['Microbe A','Microbe B']
NodeLocation: 536,96,1
NodeSize: 64,24
NodeInfo: 1,,0,,0
NodeColor: 1,19662,39321
DisplayOutputs: Object Object, Object Variable, Object Chance
NodeFontColor: 65535,65535,65535
{!40300|Att_SlicerPopupSize: 227,42}

Index medium
Att_PrevIndexValue: ['Peacock']
Title: Medium
Description: The media included in the model.
Definition: ['Peacock']
NodeLocation: 128,96,1
NodeSize: 64,24
NodeInfo: 1,,0,,0
NodeColor: 1,19662,39321
DisplayOutputs: Object Object, Object Variable, Object Chance
NodeFontColor: 65535,65535,65535

Index period
Att_PrevIndexValue: ['2035']
Title: Period
Description: The period(s) included in the model.
Definition: ['2035']
NodeLocation: 400,96,1
NodeSize: 64,24
NodeInfo: 1,,0,,0
NodeColor: 1,19662,39321
DisplayOutputs: Object Object, Object Variable, Object Chance
NodeFontColor: 65535,65535,65535

Index antimicrobial
Title: Antimicrobial
Description: A list of antimicrobials.
Definition: ['Brennamycin','Doxycolleen']
NodeLocation: 880,104,-8
NodeSize: 64,24
NodeInfo: 1,,0,,0,,,,,,0
NodeColor: 1,26216,52427
NodeFontColor: 65535,65535,65535
{!40300|Att_SlicerPopupSize: 227,42}

Index resistance
Att_PrevIndexValue: ['Brennamycin','Doxycolleen','bren-1']
Title: Resistance
Description: The antimicrobial resistance(s) included in the model.
Definition: concat(antimicrobial, resistance_gene)
NodeLocation: 672,96,1
NodeSize: 64,24
NodeInfo: 1,,0,,0
NodeColor: 1,19662,39321
DisplayOutputs: Object Object, Object Variable, Object Chance
NodeFontColor: 65535,65535,65535
{!40300|Att_SlicerPopupSize: 237,42}

Index medium_selection
{!40300|Att_PrevDomainValue: ['Peacock']}
Title: Select Medium
Description: Choose which media to evaluate in the model.
Definition: MultiChoice(medium,returnList:1)
NodeLocation: 136,88,-3
NodeSize: 64,24
NodeInfo: 1,,0,,0
Aliases: FormNode Fo519346099
NodeColor: 42598,42598,42598
{!40300|DomainExpr: medium}
NodeFontColor: 65535,65535,65535

Index microbe_selection
{!40300|Att_PrevDomainValue: ['E. coli','Salmonella']}
Title: Select Microbe
Description: Choose which microbe(s) to evaluate in the model.
Definition: MultiChoice(microbe,returnList:1)
NodeLocation: 544,88,-6
NodeSize: 64,24
NodeInfo: 1,,0,,0
Aliases: FormNode Fo626354099
NodeColor: 42598,42598,42598
{!40300|DomainExpr: microbe}
NodeFontColor: 65535,65535,65535
{!40300|Att_SlicerPopupSize: 227,32}

Index resistance_selection
{!40300|Att_PrevDomainValue: ['Brennamycin','Doxycolleen','bla-1']}
Title: Select Resistance
Description: Choose the resistance(s) to evaluate in the model.
Definition: MultiChoice(resistance,returnList:1)
NodeLocation: 680,88,-7
NodeSize: 64,24
NodeInfo: 1,,0,,0
Aliases: FormNode Fo1500309427
NodeColor: 42598,42598,42598
{!40300|DomainExpr: resistance}
NodeFontColor: 65535,65535,65535

Index locale_selection
{!40300|Att_PrevDomainValue: ['Locale A','Locale B']}
Title: Select Locale
Description: Choose which locale(s) to evaluate in the model.
Definition: MultiChoice(locale,returnList:1)
NodeLocation: 272,88,-4
NodeSize: 64,24
NodeInfo: 1,,0,,0
Aliases: FormNode Fo971827123
NodeColor: 42598,42598,42598
{!40300|DomainExpr: locale}
NodeFontColor: 65535,65535,65535

Index period_selection
Title: Select Period
Description: Choose which period(s) to evaluate in the model.
Definition: MultiChoice(period,returnList:1)
NodeLocation: 408,88,-5
NodeSize: 64,24
NodeInfo: 1,,0,,0
Aliases: FormNode Fo1022662579
NodeColor: 42598,42598,42598
{!40300|DomainExpr: period}
NodeFontColor: 65535,65535,65535

Index resistance_gene
Title: Resistance Gene
Description: A list of the antimicrobial resistance genes included in the model.
Definition: ['bren-1']
NodeLocation: 920,80,-9
NodeSize: 64,24
NodeInfo: 1,,0,,0
NodeColor: 1,26216,52427
NodeFontColor: 65535,65535,65535

Module iAM_AMR_FRAMEWORK
Title: iAM.AMR FRAMEWORK
Author: Brennan Chapman~
PHAC
Date: Thu, Sep 26, 2024 12:13 PM
NodeLocation: 400,152,1
NodeSize: 336,16
NodeInfo: 1,,,,0,,,,,,0
NodeColor: 39321,1,1
NodeFontColor: 65535,65535,65535

Index factor_fields
Att_PrevIndexValue: ['Factor Group','Reference Group','Odds Ratio','exp (SE Log OR)','Significance']
Title: Factor Fields
Description: This index sets the fields used to define a factor / resistance outcome.
Definition: ['Factor Group','Reference Group','Odds Ratio','exp (SE Log OR)','Significance']
IndexVals: ['item 1']
NodeLocation: 128,88,1
NodeSize: 64,24
NodeInfo: 1,,0,,0
NodeColor: 29491,29491,29491
NodeFontColor: 65535,65535,65535
nodenote: Frequency is not captured here because frequency relates to the factor, not the resistance outcomes described in the table.~
Changes to the Factor Group, Reference Group, Odds Ratio, or exp (SE Log OR) must be propegated to interface nodes, which text-match to slice tables.

Index factor_status
Att_PrevIndexValue: ['As Defined','Alternate','Not Included']
Title: Factor Status
Description: This index defines possible factor statuses.
Definition: ['As Defined','Alternate','Not Included']
NodeLocation: 400,88,1
NodeSize: 64,24
NodeInfo: 1,,0,,0
NodeColor: 29491,29491,29491
NodeFontColor: 65535,65535,65535
nodenote: 'As Defined' refers to factors applied as described by the source. ~
'Alternate' refers to factors applied in the opposite direction as described by the source.~
For example, if the effect of exposure to A is described by a factor, the alternate exposure is no exposure to A.~
Factors that are 'Not Included' are removed from calculations in the model.

Index interface
Att_PrevIndexValue: ['Factor Name','Group Allocation','Reference Group','Factor Group','OR','Frequency']
Title: Interface
Description: This index sets the fields shown in interface nodes.
Definition: ['Factor Name','Group Allocation','Reference Group','Factor Group','OR','Frequency']
IndexVals: ['item 1']
NodeLocation: 264,88,1
NodeSize: 64,24
NodeInfo: 1,,0,,0
NodeColor: 29491,29491,29491
NodeFontColor: 65535,65535,65535

Function selectivelyEvaluate(source: Array)
Title: Selectively Evaluate
Description: Selectively evaluate source by re-indexing source indices by cooresponding selection indices (where they exist).
Definition: /* Get a list of indices (as handles) of the sourceTable. */ ~
VAR sourceIndices     := IndexesOf(source);~
~
/* Convert the list of index handles into a list of text (lowercase). */~
VAR sourceIndexNames  := TextLowerCase(sourceIndices);~
~
/* For each index of sourceTable... */~
FOR sourceIndexName   := sourceIndexNames DO (~
~
	/* Get the handle of the index. */~
	LocalAlias sourceIndex := HandleFromIdentifier(IDENTIFIER OF sourceIndexName);	~
~
	/* Get the name of the cooresponding selection index. */~
	VAR selectionIndexName := sourceIndexName & "_selection";~
~
	/* If the selection index exists (i.e., the handle is defined ... */~
	IF (NOT IsUndef( HandleFromIdentifier(selectionIndexName) )) THEN (~
~
		/* Get the handle of the selection index. */~
		LocalAlias selectionIndex := HandleFromIdentifier(IDENTIFIER OF selectionIndexName);~
		~
		/* Re-index sourceTable. */~
		source := source[sourceIndex = selectionIndex];~
   );~
~
);~
~
source
NodeLocation: 400,168,1
NodeSize: 64,24
NodeInfo: 1,,,,0,,,,,,0
NodeColor: 26208,1,52427
NodeFontColor: 65535,65535,65535
nodenote: The selective evaluation system is enabled through the creation of a selection index with matching identifier (‘indexidentifier_selection’).

Function includedFactors(factorStatus)
Title: Included Factors
Description: Get an index of included factors from a factor status node.
Definition: Subset(factorStatus <> 'Not Included')
NodeLocation: 536,168,1
NodeSize: 64,24
NodeInfo: 1,,,,0,,,,,,0
NodeColor: 26208,1,52427
NodeFontColor: 65535,65535,65535

Function frequencyTree(~
factorsNode: Index;~
factorStatusNode;~
frequencyNode;~
)
Description: Generate a frequency tree.
Definition: /* Get included factors. */~
INDEX factors     := includedFactors(factorStatusNode);~
~
/* Get frequencies for included factors. */~
VAR frequencies := frequencyNode[factorsNode = factors];~
~
/* Make a frequency tree. */~
fTree(frequencies, factors)
NodeLocation: 536,248,1
NodeSize: 64,24
NodeInfo: 1,,,,0,,,,,,0
NodeColor: 26208,1,52427
NodeFontColor: 65535,65535,65535

Function oddsRatioTree(oddsRatios; factors: index)
Title: oddsRatio Tree
Description: Generate the product of the powerset of all odds ratios; make an odds ratio tree.
Definition: /* Get the number of factors. */~
VAR     numberOfFactors := Size(factors); ~
~
/* The tree will have 2 ^ numberOfFactors leaves. */ ~
/* Generate an index of length 2 ^ numberOfFactors. */~
INDEX   leafNumber      := 1..(2 ^ numberOfFactors);~
~
/* Generate a tree (an array) of length 2 ^ numberOfFactors. */~
/* Initialize with (1). */~
VAR    orTree           := Array(leafNumber, 1);~
~
/* For each factor .. */~
FOR    factorPosition   := 1..numberOfFactors DO (~
~
	/* Get the factor's odds ratio (by position). */~
	VAR oddsRatio        := Slice(oddsRatios, factors, factorPosition);~
~
	/* Get the number of existing leaves on the tree. */~
	/* For each existing leaf, a new leaf will be added. */~
	VAR numberOfLeaves   := 2 ^ (factorPosition - 1);~
~
	/* To generate each new leaf ... */~
	FOR newLeafPosition  := 1 .. numberOfLeaves DO (~
		~
		/* Multiply the existing leaf by the odds ratio, and insert the new leaf in the tree (by position). */~
		orTree[@leafNumber = (numberOfLeaves + newLeafPosition)] := orTree[@leafNumber = newLeafPosition] * oddsRatio;~
	);~
~
);~
~
orTree
NodeLocation: 128,248,1
NodeSize: 64,24
NodeInfo: 1,,,,0,,,,,,0
NodeColor: 26208,1,52427
NodeFontColor: 65535,65535,65535

Function probabilityTree(~
pIN;~
factorsNode: index;~
factorStatusNode; ~
oddsRatioNode;~
)
Description: Generate a probability tree.
Definition: /* Get included factors as index. */~
INDEX incFactors := includedFactors(factorStatusNode);~
~
/* Get odds ratios for included factors. */~
VAR oddsRatios   := oddsRatioNode[factorsNode = incFactors];~
~
/* Make an odds ratio tree. */~
VAR orTree       := oddsRatioTree(oddsRatios: oddsRatios, factors:incFactors);~
~
/* Update the probability IN with the odds ratios, creating a probability tree. */~
(orTree * pIN) / (1 - pIN + orTree * pIN)
NodeLocation: 264,248,1
NodeSize: 64,24
NodeInfo: 1,,,,0,,,,,,0
NodeColor: 26208,1,52427
NodeFontColor: 65535,65535,65535

Index countTotal
Att_PrevIndexValue: ['Count','Total']
Title: CountTotal
Description: This index sets the two dimensions used to define a countTable (a table of counts of outcomes and total observations). Convert a countTable to a table of prevalences using getPrevalenceCountTable().
Definition: ['Count','Total']
NodeLocation: 536,88,1
NodeSize: 64,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0,,,
NodeColor: 29491,29491,29491
NodeFontColor: 65535,65535,65535

Function fTree(freqencies; factors: Index)
Title: fTree
Description: Generate the frequency of every combination of factors; make a frequency tree.
Definition: /* Get the number of factors. */~
VAR     numberOfFactors := Size(factors); ~
~
/* The tree will have 2 ^ numberOfFactors leaves. */ ~
/* Generate an index of length 2 ^ numberOfFactors. */~
INDEX   leafNumber      := 1..(2 ^ numberOfFactors);~
~
/* Generate a tree (an array) of length 2 ^ numberOfFactors. */~
/* Initialize with (1). */~
VAR    fTree            := Array(leafNumber, 1);~
~
/* For each factor .. */~
FOR    factorPosition   := 1..numberOfFactors DO (~
~
	/* Get the factor's frequency (by position). */~
	VAR frequency        := Slice(freqencies, factors, factorPosition);~
~
	/* Get the number of existing leaves on the tree. */~
	/* For each existing leaf, a new leaf will be added. */~
	VAR numberOfLeaves   := 2 ^ (factorPosition - 1);~
~
	/* To generate each new leaf ... */~
	FOR newLeafPosition  := 1 .. numberOfLeaves DO (~
		~
		/* Multiply the existing leaf by the frequency, and insert the new leaf in the tree (by position). */~
		fTree[@leafNumber = (numberOfLeaves + newLeafPosition)] := fTree[@leafNumber = newLeafPosition] * frequency;~
      /* Replace the existing leaf with the complimentary frequency (1 - frequency). */~
		fTree[@leafNumber = newLeafPosition] := fTree[@leafNumber = newLeafPosition] * (1 - frequency);~
	);~
~
);~
~
fTree
NodeLocation: 400,248,1
NodeSize: 64,24
NodeInfo: 1,,,,0,,,,,,0
NodeColor: 26208,1,52427
NodeFontColor: 65535,65535,65535

Function mergeTrees(frequencyTree; probabilityTree; factors: Index)
Title: mergeTrees
Description: Multiply the leaves of the frequency and probability trees together, then sum to calculate the new probability.
Definition: /* Get the number of factors. */~
VAR    numberOfFactors := Size(factors); ~
~
/* To perform operations on the trees, they must share indices. */~
/* .leafNumber is an implicit index; re-index the trees using a shared index by position. */~
/* The trees have 2 ^ numberOfFactors leaves; generate a shared index of length 2 ^ numberOfFactors. */~
INDEX  leafNumber      := 1..(2 ^ numberOfFactors);~
VAR    xTree           := probabilityTree[@.leafNumber = @leafNumber] * frequencyTree[@.leafNumber = @leafNumber];~
~
/* Sum along shared index. */~
Sum(xTree, leafNumber)
NodeLocation: 672,248,1
NodeSize: 64,24
NodeInfo: 1,,,,0,,,,,,0
NodeColor: 26208,1,52427
NodeFontColor: 65535,65535,65535

Function betaPrevalence(count; total)
Title: beta Prevalence Counts
Description: Create a Beta(a + 1, b – a + 1) distribution representing prevalence, where a = count of events, and b = total observations.
Definition: Beta(count + 1, (total - count + 1))
NodeLocation: 128,168,1
NodeSize: 64,24
NodeInfo: 1,,,,0,,,,,,0
NodeColor: 26208,1,52427
NodeFontColor: 65535,65535,65535

Function getPrevalenceCountTable(~
countTable;~
replaceMissing: Boolean Optional = False;~
missingCount: Optional Number = 1;~
missingTotal: Optional Number = 15~
)
Title: Prevalence from Count Table
Description: Get prevalence represented as a beta distribution from a countTable (a table of counts indexed by countTable).~
~
Optionally, replace missing count and total values. If << replaceMissing >> is FALSE, missing values return NULL. Specify << missingCount >> and << missingTotal >> to replace defaults.
Definition: /* betaPrevalence() is called in each branch intentionally; an IF/ELSE must do a (non-assignment) action. */~
~
IF (replaceMissing = True) THEN (~
~
	/* Replace missing values; default is 1 and 15 (~6%). */~
	var count := IF countTable[countTotal='Count'] = Null THEN  missingCount ELSE countTable[countTotal='Count'];~
	var total := IF countTable[countTotal='Total'] = Null THEN  missingTotal ELSE countTable[countTotal='Total'];~
~
	/* Return beta distribution. */~
	betaPrevalence(count:count, total:total);~
~
) ELSE (~
~
	var count := countTable[countTotal='Count'];~
	var total := countTable[countTotal='Total'];~
~
	/* Return beta distribution. */~
	betaPrevalence(count:count, total:total);~
~
);
NodeLocation: 264,168,1
NodeSize: 64,24
NodeInfo: 1,,,,0,,,,,,0
NodeColor: 26208,1,52427
NodeFontColor: 65535,65535,65535

Close iAM_AMR_FRAMEWORK

Variable XX_F_factors
Att_PrevIndexValue: [factor_a,factor_B,factor_C]
Title: Farm Factors
Description: Add factors here.
Definition: [factor_a,factor_B,factor_C]
NodeLocation: 432,704,1
NodeSize: 48,24
NodeInfo: 1,,0,,0,,,,,,0
NodeColor: 29491,29491,29491
ReformVal: [factor_fields,Self]
Att_ResultSliceState: [microbe,1,resistance,1,Self,1,factor_fields,1]

Variable XX_F_factor_status
Title: Factor Status
Description: Factor status sets the direction of the factor or excludes it from the model.
Definition: Table(XX_F_factors)(Choice(factor_status,1,0),Choice(factor_status,1,0),Choice(factor_status,1,0))
NodeLocation: 432,640,1
NodeSize: 48,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
DefnState: 2,374,278,622,524,0,DFNM
NodeColor: 58978,52427,65535
ReformDef: [Null,XX_F_factors]
TableCellDefault: Choice(factor_status, 3, 0)
Default: Choice(factor_status,3,0)

Variable XX_F_Interface
Title: Farm Interface
Definition: MultiTable(interface)(IndexValue(XX_F_factors),XX_F_factor_status,IF XX_F_factor_status = 'As Defined' ~
THEN XX_F_factors[factor_fields='Reference Group']~
ELSE IF XX_F_factor_status = 'Alternate'~
THEN XX_F_factors[factor_fields='Factor Group']~
ELSE '',IF XX_F_factor_status = 'As Defined' ~
THEN XX_F_factors[factor_fields='Factor Group']~
ELSE IF XX_F_factor_status = 'Alternate'~
THEN XX_F_factors[factor_fields='Reference Group']~
ELSE '',IF XX_F_factor_status = 'As Defined' ~
THEN XX_F_factors[factor_fields = 'Odds Ratio']~
ELSE IF XX_F_factor_status = 'Alternate'~
THEN 1 / XX_F_factors[factor_fields = 'Odds Ratio']~
ELSE 1,XX_F_freq)
NodeLocation: 544,640,1
NodeSize: 48,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
DefnState: 2,79,674,1935,529,0,DFNM
NodeColor: 42592,19661,65535
ReformDef: [interface,XX_F_factors]
Att_ResultSliceState: [microbe,1,resistance,1,XX_F_factors,1,Interface,1]
Att_EditSliceState: [microbe,1,resistance,2,XX_F_factors,1,interface,1]

Variable XX_F_freq
Title: Frequency
Description: The frequency of factor exposure.
Definition: Table(XX_F_factors)(0.5,0.5,0.5)
NodeLocation: 656,640,1
NodeSize: 48,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
DefnState: 2,128,403,495,514,0,DFNM
NodeColor: 58978,52427,65535
NumberFormat: 2,%,4,0,0,0,4,0,$,0,"ABBREV",0,,,0,0,15,,0
TableCellDefault: 0.5
{!40700|Att_CellFormat: CellSpan(XX_F_factors,CellNumberFormat('Percentage',2,0,0,dateFormat:'ABBREV',fullPrecision:0,numbersAsDates:0,datesAsNumbers:0,digits_:4,zeroes_:2,showZeroImPart:0),1,header:0)}
Default: 0.5
nodenote: A frequency must be specified for each factor; by default, it is set to 0.5 or 50%.~
~
A factor whose frequency is 0 is included in calculations, but has no effect on the model.

Chance XX_F_oddsratios
Title: Odds Ratios
Description: The odds ratio expressed as a log normal distribution.
Definition: VAR distributions := LogNormal(XX_F_Interface[interface='OR'], XX_F_factors[factor_fields = 'exp (SE Log OR)']);~
~
selectivelyEvaluate(distributions)
NodeLocation: 544,704,1
NodeSize: 56,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
NodeColor: 49151,49151,49151
GraphSetup: Att_GraphValueRange Graph_Pdf_Valdim:1,0,1,,,,,0,130.5110603570938,0~
Att_GraphValueRange XX_F_oddsratios:|1:1,,1,,,,,0.9689284443855286,1.027821409702301,0
ReformVal: [Undefined,XX_F_factors,Undefined,1,Undefined,1]
Att_ResultSliceState: [microbe_selection,1,resistance_selection,1,XX_F_factors,1,Sys_LocalIndex('Step'),1]
{!40200|Att_GraphSetupSlices: [3,1,DensityIndex,1]}

Variable XX_F_prob_tree
Title: Probability Tree
Units: p(res)
Description: The probability of resistance after the effect(s) of every possible combination of length 1 to n (the powerset) of included factors.
Definition: probabilityTree(pIN:              XX_F_in,~
                factorsNode:      XX_F_factors, ~
                factorStatusNode: XX_F_factor_status, ~
					oddsRatioNode:    XX_F_oddsratios~
					)
NodeLocation: 544,768,1
NodeSize: 48,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
NodeColor: 49151,49151,49151
ReformVal: [resistance_selection,Sys_LocalIndex('leafNumber'),Undefined,1]
Att__TotalsIndex: []
Att_ResultSliceState: [microbe_selection,1,period_selection,1,Sys_LocalIndex('leafNumber'),1,resistance_selection,1]

Variable XX_baseline
Title: Baseline p(res)
Description: The baseline probability of resistance of the microbe(s) in the medium.
Definition: /* Get the baseline count table for Peacock. */~
var bl_countTable := baseline_countTable[medium = 'Peacock'];~
~
/* Get a beta distribution representing the count data. */~
getPrevalenceCountTable(countTable:     bl_countTable, ~
							 replaceMissing: False)
NodeLocation: 128,768,1
NodeSize: 64,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
NodeColor: 1,32770,65535
ReformVal: [locale,microbe,Undefined,Undefined,1]
NodeFontColor: 65535,65535,65535
Att_ResultSliceState: [period,1,resistance,1,microbe,1,Sys_LocalIndex('Step'),1]
Att_XRole: -1

Variable XX_F_freq_tree
Title: Frequency Tree
Description: The frequency of all possible combinations of included factors.
Definition: frequencyTree(factorsNode:      XX_F_factors,~
              factorStatusNode: XX_F_factor_status,~
              frequencyNode:    XX_F_freq~
				 )
NodeLocation: 656,704,1
NodeSize: 48,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
NodeColor: 49151,49151,49151
ReformVal: [Sys_LocalIndex('tblWidth'),Sys_LocalIndex('tblLength')]
NumberFormat: 2,%,4,2,0,0,4,0,$,0,"ABBREV",0,,,0,0,15,,0

Objective XX_F_resistance
Title: Farm ~
p(res) out
Description: The probability of resistance after the effects of all included factors,
Definition: /* Get an index of included factors. */ ~
INDEX incFactors := includedFactors(XX_F_factor_status);~
~
/* Merge the trees to calculate the probability of resistance out. */~
mergeTrees(frequencyTree:   XX_F_freq_tree, ~
			 probabilityTree: XX_F_prob_tree, ~
			 factors:         incFactors)
NodeLocation: 656,768,1
NodeSize: 48,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
NodeColor: 1,32770,65535
GraphSetup: Att_GraphValueRange XX_F_resistance:|1:1,,1,,,,,1,1,1~
Att_GraphValueRange Graph_Pdf_Valdim:1,0,1,,,,,1,1,1
ReformVal: [locale,microbe,Undefined,Undefined,Undefined,2]
NodeFontColor: 65535,65535,65535
Att_ResultSliceState: [microbe_selection,1,period_selection,1,resistance_selection,1,Sys_LocalIndex('Step'),1]
{!40200|Att_GraphSetupSlices: [3,1,DensityIndex,1]}

Variable XX_Ab_factors
Att_PrevIndexValue: [factor_D]
Title: Abattoir Factors
Description: Add factors here.
Definition: [factor_D]
NodeLocation: 880,704,1
NodeSize: 48,24
NodeInfo: 1,1,0,1,0,1,0,,0,,0
NodeColor: 29491,29491,29491

Variable XX_Ab_factor_status
Title: Factor Status
Description: Factor status sets the direction of the factor or excludes it from the model.
Definition: Table(XX_Ab_factors)(Choice(factor_status,1,0))
NodeLocation: 880,640,1
NodeSize: 48,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
NodeColor: 58978,52427,65535
TableCellDefault: Choice(factor_status, 3, 0)
Default: Choice(factor_status,3,0)

Variable XX_Ab_Interface
Title: Abattoir Interface
Definition: MultiTable(interface)(IndexValue(XX_Ab_factors),XX_Ab_factor_status,IF XX_Ab_factor_status = 'As Defined' ~
THEN XX_Ab_factors[factor_fields='Reference Group']~
ELSE IF XX_Ab_factor_status = 'Alternate'~
THEN XX_Ab_factors[factor_fields='Factor Group']~
ELSE '',IF XX_Ab_factor_status = 'As Defined' ~
THEN XX_Ab_factors[factor_fields='Factor Group']~
ELSE IF XX_Ab_factor_status = 'Alternate'~
THEN XX_Ab_factors[factor_fields='Reference Group']~
ELSE '',IF XX_Ab_factor_status = 'As Defined' ~
THEN XX_Ab_factors[factor_fields = 'Odds Ratio']~
ELSE IF XX_Ab_factor_status = 'Alternate'~
THEN 1 / XX_Ab_factors[factor_fields = 'Odds Ratio']~
ELSE 1,XX_Ab_freq)
NodeLocation: 992,640,1
NodeSize: 48,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
DefnState: 2,232,348,1979,546,0,DFNM
NodeColor: 42592,19661,65535
ReformDef: [interface,XX_Ab_factors]

Variable XX_Ab_freq
Title: Frequency
Description: The frequency of factor exposure.
Definition: Table(XX_Ab_factors)(0.5)
NodeLocation: 1104,640,1
NodeSize: 48,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
DefnState: 2,953,202,416,303,0,MIDM
NodeColor: 58978,52427,65535
NumberFormat: 2,%,4,2,0,0,4,0,$,0,"ABBREV",0,,,0,0,15,,0
TableCellDefault: 0.5
Default: 0.5
nodenote: A frequency must be specified for each factor; by default, it is set to 0.5 or 50%.~
~
A factor whose frequency is 0 is included in calculations, but has no effect on the model.

Chance XX_Ab_oddsratios
Title: Odds Ratios
Description: The odds ratio expressed as a log normal distribution.
Definition: VAR distributions := LogNormal(XX_Ab_Interface[interface='OR'], XX_Ab_factors[factor_fields = 'exp (SE Log OR)']);~
~
selectivelyEvaluate(distributions)
NodeLocation: 992,704,1
NodeSize: 56,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
NodeColor: 49151,49151,49151
ReformVal: [Undefined,XX_Ab_factors,Undefined,2,Undefined,1]

Variable XX_Ab_prob_tree
Title: Probability Tree
Units: p(res)
Description: The probability of resistance after the effect(s) of every possible combination of length 1 to n (the powerset) of included factors.
Definition: probabilityTree(pIN:              XX_Ab_in,~
                factorsNode:      XX_Ab_factors, ~
                factorStatusNode: XX_AB_factor_status, ~
					oddsRatioNode:    XX_AB_oddsratios~
					)
NodeLocation: 992,768,1
NodeSize: 48,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
NodeColor: 49151,49151,49151
ReformVal: [microbe,locale,Undefined,1]
Att_ResultSliceState: [microbe_selection,1,period_selection,1,Sys_LocalIndex('tblLength'),1,locale_selection,1,resistance_selection,1]

Variable XX_Ab_freq_tree
Title: Frequency Tree
Description: The frequency of all possible combinations of included factors.
Definition: frequencyTree(factorsNode:      XX_Ab_factors, ~
              factorStatusNode: XX_Ab_factor_status,~
				 frequencyNode:    XX_Ab_freq ~
              )
NodeLocation: 1104,704,1
NodeSize: 48,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
NodeColor: 49151,49151,49151

Objective XX_Ab_resistance
Title: Abattoir~
p(res) out
Description: The probability of resistance after the effects of all included factors,
Definition: /* Get an index of included factors. */ ~
INDEX incFactors := includedFactors(XX_Ab_factor_status);~
~
/* Merge the trees to calculate the probability of resistance out. */~
mergeTrees(frequencyTree:   XX_Ab_freq_tree, ~
			 probabilityTree: XX_Ab_prob_tree, ~
			 factors:         incFactors)
NodeLocation: 1104,768,1
NodeSize: 48,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
NodeColor: 1,32770,65535
NodeFontColor: 65535,65535,65535

Variable XX_Re_factors
Att_PrevIndexValue: [factor_E]
Title: Retail Factors
Description: Add factors here.
Definition: [factor_E]
NodeLocation: 1328,704,1
NodeSize: 48,24
NodeInfo: 1,1,0,1,0,1,0,,0,,0
NodeColor: 29491,29491,29491

Variable XX_Re_factor_status
Title: Factor Status
Description: Factor status sets the direction of the factor or excludes it from the model.
Definition: Table(XX_Re_factors)(Choice(factor_status,1,0))
NodeLocation: 1328,640,1
NodeSize: 48,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
NodeColor: 58978,52427,65535
TableCellDefault: Choice(factor_status, 3, 0)
Default: Choice(factor_status,3,0)

Variable XX_Re_Interface
Title: Retail Interface
Definition: MultiTable(interface)(IndexValue(XX_Re_factors),XX_Re_factor_status,IF XX_Re_factor_status = 'As Defined' ~
THEN XX_Re_factors[factor_fields='Reference Group']~
ELSE IF XX_Re_factor_status = 'Alternate'~
THEN XX_Re_factors[factor_fields='Factor Group']~
ELSE '',IF XX_Re_factor_status = 'As Defined' ~
THEN XX_Re_factors[factor_fields='Factor Group']~
ELSE IF XX_Re_factor_status = 'Alternate'~
THEN XX_Re_factors[factor_fields='Reference Group']~
ELSE '',IF XX_Re_factor_status = 'As Defined' ~
THEN XX_Re_factors[factor_fields = 'Odds Ratio']~
ELSE IF XX_Re_factor_status = 'Alternate'~
THEN 1 / XX_Re_factors[factor_fields = 'Odds Ratio']~
ELSE 1,XX_Re_freq)
NodeLocation: 1440,640,1
NodeSize: 48,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
DefnState: 2,670,304,1751,546,0,DFNM
NodeColor: 42592,19661,65535
ReformDef: [interface,XX_Re_factors]

Variable XX_Re_freq
Title: Frequency
Description: The frequency of factor exposure.
Definition: Table(XX_Re_factors)(0.5)
NodeLocation: 1552,640,1
NodeSize: 48,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
DefnState: 2,953,202,416,303,0,MIDM
NodeColor: 58978,52427,65535
NumberFormat: 2,%,4,2,0,0,4,0,$,0,"ABBREV",0,,,0,0,15,,0
TableCellDefault: 0.5
Default: 0.5
nodenote: A frequency must be specified for each factor; by default, it is set to 0.5 or 50%.~
~
A factor whose frequency is 0 is included in calculations, but has no effect on the model.

Chance XX_Re_oddsratios
Title: Odds Ratios
Description: The odds ratio expressed as a log normal distribution.
Definition: VAR distributions := LogNormal(XX_Re_Interface[interface='OR'], XX_Re_factors[factor_fields = 'exp (SE Log OR)']);~
~
selectivelyEvaluate(distributions)
NodeLocation: 1440,704,1
NodeSize: 56,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
NodeColor: 49151,49151,49151
ReformVal: [Undefined,XX_Re_factors,Undefined,2,1,1]
Att_ResultSliceState: [microbe_selection,1,XX_Re_factors,1,resistance_selection,1,Sys_LocalIndex('Step'),1]
Att_XRole: -1

Chance microbe_recovery_rate
Title: Microbe Recovery Rate
Units: mic / med
Description: The proportion of medium units that include the microbe.
Definition: Table(locale,microbe,medium,period)(~
0.15,~
0.15,~
0.15,~
0.15)
NodeLocation: 1800,704,1
NodeSize: 72,32
NodeInfo: 1,1,1,1,0,1,0,,0,,0
DefnState: 2,1219,359,416,303,0,MIDM
NodeColor: 58978,52427,65535
ReformDef: [locale,microbe]
Att_ResultSliceState: [microbe,2,bl_animal,3,bl_year,1,bl_region,1]
Att_EditSliceState: [medium,1,period,1,microbe,1,locale,1]
nodenote: This is the proportion of medium units that contain either the resistant or susceptible microbe.

Variable med_res_mic_rec_rate
Title: Prop. Exposures AMR+
Units: res-mic / med
Description: The proportion of media units that include the resistant microbe.
Definition: selectivelyEvaluate(XX_exp_resistance * microbe_recovery_rate)
NodeLocation: 1800,832,1
NodeSize: 72,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
DefnState: 2,1470,170,416,303,0,MIDM
NodeColor: 39321,58983,65535
Att_ResultSliceState: [Pathogen,1,Region,1,Animal,1]
nodenote: Prior to this node, the model tracks p(res) - the probability of resistance for a given microbe.~
Here, we multiply by the recovery rate of the microbe (resistant or susceptible) to determine the proportion of media units that include a resistant microbe.

Variable population
Title: Population
Units: pers
Description: The number of persons in the locale(s).
Definition: Table(locale)(1M,2M)
NodeLocation: 1960,576,1
NodeSize: 72,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
DefnState: 2,1742,765,416,303,0,DFNM
NodeColor: 58978,52427,65535
Att_EditSliceState: [period,1,microbe,1,locale,1]
nodenote: This node can be indexed by period to examine the effect of changes in the size of the population.~
Population has a linear relationship with model output.

Variable medium_exposure_rate
Title: Medium Exposure Rate
Units: med / wk
Description: The proportion of persons exposed to the medium in the locale(s) in a one-week period.
Definition: Table(locale,medium)(~
0.25,~
0.35)
NodeLocation: 1800,640,1
NodeSize: 72,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
NodeColor: 58978,52427,65535
ReformDef: [locale,medium]
Att_EditSliceState: [period,1,medium,1,locale,1]
nodenote: This node can be indexed by period to examine the effect of changes in the exposure rate.~
Medium Exposure Rate has a linear relationship with model output.

Variable medium_exposures
Title: Medium Exposure Events
Units: pers-med / wk
Description: The number of persons exposed to the medium in the locale(s) in a one week period.
Definition: population * medium_exposure_rate
NodeLocation: 1960,640,1
NodeSize: 72,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
NodeColor: 49151,49151,49151

Objective res_microbe_expos
Title: Exposure
Units: pers-exp-res-mic / wk
Description: The number of persons potentially exposed to an antimicrobial resistant microbe via the medium in the locale(s) in a one-week period.
Definition: selectivelyEvaluate(XX_exp_resistance * microbe_exposures)
NodeLocation: 1960,768,1
NodeSize: 72,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
Aliases: FormNode Fo1760155571
NodeColor: 52427,13109,1
NodeFontColor: 65535,65535,65535
Att_ResultSliceState: [period_selection,1,medium_selection,1,locale_selection,1,microbe_selection,1,resistance_selection,1]
nodenote: Assuming a one-to-one , the number of servings at risk from an antimicrobial resisant microbe.

Variable XX_Re_prob_tree
Title: Probability Tree
Units: p(res)
Definition: probabilityTree(pIN:              XX_Re_in,~
                factorsNode:      XX_Re_factors, ~
                factorStatusNode: XX_Re_factor_status, ~
					oddsRatioNode:    XX_Re_oddsratios~
					)
NodeLocation: 1440,768,1
NodeSize: 48,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
NodeColor: 49151,49151,49151
ReformVal: [Undefined,Self,Undefined,1]
Att_ResultSliceState: [Pathogen,1,Self,1,Region,1]

Variable XX_Re_freq_tree
Title: Frequency Tree
Description: The frequency of all possible combinations of included factors.
Definition: frequencyTree(factorsNode:      XX_Re_factors, ~
              factorStatusNode: XX_Re_factor_status,~
				 frequencyNode:    XX_Re_freq ~
              )
NodeLocation: 1552,704,1
NodeSize: 48,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
NodeColor: 49151,49151,49151

Objective XX_Re_resistance
Title: Retail ~
p(res) out
Description: The probability of resistance after the effects of all included factors,
Definition: /* Get an index of included factors. */ ~
INDEX incFactors := includedFactors(XX_Re_factor_status);~
~
/* Merge the trees to calculate the probability of resistance out. */~
mergeTrees(frequencyTree:   XX_Re_freq_tree, ~
			 probabilityTree: XX_Re_prob_tree, ~
			 factors:         incFactors)
NodeLocation: 1552,768,1
NodeSize: 48,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
NodeColor: 1,32770,65535
NodeFontColor: 65535,65535,65535
Att_ResultSliceState: [microbe_selection,1,period_selection,1,locale_selection,1,resistance_selection,1]

FormNode Fo626354099
Title: Select Microbe
Definition: 0
NodeLocation: 568,288,1
NodeSize: 160,16
NodeInfo: 1,,,,,,,142,,,,,,0
NodeColor: 19662,39321,1
Original: microbe_selection
NodeFontColor: 0,0,0

Variable Placeholder
Title: Placeholder Factor
Description: This node acts as a placeholder, preventing errors where no factors are available.
Definition: Table(factor_fields)('Placeholder Factor Group','Placeholder Reference Group',1,1,'N/A')
NodeLocation: 904,296,1
NodeSize: 56,24
NodeInfo: 1,1,0,1,0,1,0,,0,,0
DefnState: 2,216,218,1075,572,0,MIDM
NodeColor: 1,49155,65535
ReformDef: [factor_fields,Null]

Chance baseline_countTable
Title: Baseline Count Data
Definition: Table(microbe,medium,period,resistance,countTotal)(~
5,100,~
10,100,~
20,100,~
25,100,~
30,100,~
40,100)
NodeLocation: 128,680,1
NodeSize: 64,32
NodeInfo: 1,,,,0,,,,,,0
DefnState: 2,70,228,1665,502,0,DFNM
NodeColor: 58978,52427,65535
ReformDef: [locale,resistance]
ReformVal: [medium,microbe,Undefined,Undefined,Undefined,2]
Att_ResultSliceState: [locale,1,countTotal,1,period,1,resistance,1,microbe,1,medium,1]
Att_EditSliceState: [period,1,medium,1,countTotal,1,resistance,1,microbe,2]
nodenote: This node can be indexed by period to examine the effect of changes in the baseline.

Variable XX_Ab_in
Title: Abattoir~
p(res) in
Description: The prevalence of resistance coming into the stage.
Definition: XX_F_resistance
NodeLocation: 880,768,1
NodeSize: 48,24
NodeInfo: 1,1,1,1,0,1,0,,0,,0
NodeColor: 1,32770,65535
NodeFontColor: 65535,65535,65535

Variable XX_Re_in
Title: Retail~
p(res) in
Description: The prevalence of resistance coming into the stage.
Definition: XX_Ab_resistance
NodeLocation: 1328,768,1
NodeSize: 48,24
NodeInfo: 1,,,,0
NodeColor: 1,32770,65535
NodeFontColor: 65535,65535,65535

Variable XX_F_in
Title: Farm ~
p(res) in
Description: The prevalence of resistance coming into the stage.
Definition: selectivelyEvaluate(XX_baseline)
NodeLocation: 432,768,1
NodeSize: 48,24
NodeInfo: 1,,,,0,,,,,,0
NodeColor: 1,32770,65535
NodeFont: Arial,15
ReformVal: [Undefined,resistance_selection,Undefined,Undefined,1]
NodeFontColor: 65535,65535,65535
Att_ResultSliceState: [period_selection,1,microbe_selection,1,resistance_selection,2,Sys_LocalIndex('Step'),1]
Att_XRole: -1

Variable factor_template
Title: Factor Template
Description: Duplicate me to create a factor.
Definition: Table(factor_fields,microbe,resistance)(~
Null,Null,Null,~
Null,Null,Null,~
Null,Null,Null,~
Null,Null,Null,~
1,1,1,~
1,1,1,~
1,1,1,~
1,1,1,~
Null,Null,Null,~
Null,Null,Null)
NodeLocation: 904,224,1
NodeSize: 72,32
NodeInfo: 1,1,0,1,0,1,0,,0,,0
DefnState: 2,402,347,1075,572,0,DFNM
NodeColor: 1,49155,65535
ReformDef: [factor_fields,resistance]
Att_EditSliceState: [microbe,1,resistance,1,factor_fields,1]

FormNode Fo1500309427
Title: Select Resistance
Definition: 0
NodeLocation: 568,248,1
NodeSize: 160,16
NodeInfo: 1,,,,,,,138,,,,,,0
NodeColor: 42598,42598,42598
Original: resistance_selection
NodeFontColor: 0,0,0

FormNode Fo971827123
Title: Select Locale
Definition: 0
NodeLocation: 568,208,1
NodeSize: 160,16
NodeInfo: 1,,,,,,,142,,,,,,0
NodeColor: 42598,42598,42598
Original: locale_selection
NodeFontColor: 0,0,0

Variable factor_a
Title: Factor A
Definition: Table(factor_fields,microbe,resistance)(~
Null,Null,Null,~
Null,Null,Null,~
Null,Null,Null,~
Null,Null,Null,~
0.5,0.5,0.5,~
0.5,0.5,0.5,~
0.75,0.75,0.75,~
0.75,0.75,0.75,~
Null,Null,Null,~
Null,Null,Null)
NodeLocation: 432,544,1
NodeSize: 48,32
NodeInfo: 1,1,0,1,0,1,0,,0,,0
DefnState: 2,402,347,1075,572,0,DFNM
NodeColor: 1,49155,65535
ReformDef: [factor_fields,resistance]
Att_EditSliceState: [microbe,2,resistance,1,factor_fields,1]

Variable factor_B
Title: Factor B
Definition: Table(factor_fields,microbe,resistance)(~
Null,Null,Null,~
Null,Null,Null,~
Null,Null,Null,~
Null,Null,Null,~
1.15,1.15,1.15,~
1.15,1.15,1.15,~
1.5,1.5,1.5,~
1.5,1.5,1.5,~
Null,Null,Null,~
Null,Null,Null)
NodeLocation: 544,544,1
NodeSize: 48,32
NodeInfo: 1,1,0,1,0,1,0,,0,,0
DefnState: 2,402,347,1075,572,0,DFNM
NodeColor: 1,49155,65535
ReformDef: [factor_fields,resistance]
Att_EditSliceState: [microbe,1,resistance,1,factor_fields,1]

Variable factor_C
Title: Factor C
Description: Factor C.
Definition: Table(factor_fields,microbe,resistance)(~
Null,Null,Null,~
Null,Null,Null,~
Null,Null,Null,~
Null,Null,Null,~
3,3,3,~
3,3,3,~
1.5,1.5,1.5,~
1.5,1.5,1.5,~
Null,Null,Null,~
Null,Null,Null)
NodeLocation: 656,544,1
NodeSize: 48,32
NodeInfo: 1,1,0,1,0,1,0,,0,,0
DefnState: 2,402,347,1075,572,0,DFNM
NodeColor: 1,49155,65535
ReformDef: [factor_fields,resistance]
Att_EditSliceState: [microbe,2,resistance,1,factor_fields,1]

{!50500|ArrowClass Arrow485758899}
{!50500|Att_HeadNode: XX_F_oddsratios}
{!50500|Att_TailNode: XX_F_Interface}
{!50500|Att_ArrowWayPoints: [Null,-92.38594467591453]}

{!50500|ArrowClass Arrow546248627}
{!50500|NodeInfo: ,,,,,,,,,,,0}
{!50500|Att_HeadNode: XX_F_freq_tree}
{!50500|Att_TailNode: XX_F_factor_status}

{!50500|ArrowClass Arrow412030899}
{!50500|NodeInfo: ,,,,,,,,,,,0}
{!50500|Att_HeadNode: XX_F_resistance}
{!50500|Att_TailNode: XX_F_factor_status}

{!50500|ArrowClass Arrow871307187}
{!50500|NodeInfo: ,,,,,,,,,,,0}
{!50500|Att_HeadNode: XX_F_prob_tree}
{!50500|Att_TailNode: XX_F_factor_status}

FormNode Fo1022662579
Title: Select Period
Definition: 0
NodeLocation: 224,248,1
NodeSize: 160,16
NodeInfo: 1,,,,,,,116,,,,,,0
NodeColor: 42598,42598,42598
Original: period_selection
NodeFontColor: 0,0,0

FormNode Fo519346099
Title: Select Medium
Definition: 0
NodeLocation: 224,208,1
NodeSize: 160,16
NodeInfo: 1,,,,,,,119,,,,,,0
NodeColor: 42598,42598,42598
Original: medium_selection
NodeFontColor: 0,0,0

Variable factor_D
Title: Factor D (C2)
Definition: Table(factor_fields,microbe,resistance)(~
Null,Null,Null,~
Null,Null,Null,~
Null,Null,Null,~
Null,Null,Null,~
3,3,3,~
3,3,3,~
1.5,1.5,1.5,~
1.5,1.5,1.5,~
Null,Null,Null,~
Null,Null,Null)
NodeLocation: 880,544,1
NodeSize: 48,32
NodeInfo: 1,1,0,1,0,1,0,,0,,0
DefnState: 2,402,347,1075,572,0,DFNM
NodeColor: 1,49155,65535
ReformDef: [factor_fields,resistance]
Att_EditSliceState: [microbe,1,resistance,1,factor_fields,1]

Variable microbe_exposures
Title: Microbe Exposure Events
Units: mic-pers / wk
Description: The number of persons potentially exposed to the microbe via the medium in the locale(s) in a one-week period.
Definition: medium_exposures * microbe_recovery_rate
NodeLocation: 1960,704,1
NodeSize: 72,24
NodeInfo: 1,,,,0,,,,,,0
NodeColor: 49151,49151,49151

Variable XX_exp_resistance
Title: p(res) Exposure
Description: The probability the microbe will be antimicrobial resistant at the point of exposure.
Definition: XX_Re_resistance
NodeLocation: 1800,768,1
NodeSize: 72,24
NodeInfo: 1,,,,0,,,,,,0
NodeColor: 1,32770,65535
NodeFontColor: 65535,65535,65535
Att_ResultSliceState: [microbe_selection,1,period_selection,1,locale_selection,1,resistance_selection,1,Sys_LocalIndex('Step'),1]

Variable factor_E
Title: Factor E (C3)
Definition: Table(factor_fields,microbe,resistance)(~
Null,Null,Null,~
Null,Null,Null,~
Null,Null,Null,~
Null,Null,Null,~
3,3,3,~
3,3,3,~
1.5,1.5,1.5,~
1.5,1.5,1.5,~
Null,Null,Null,~
Null,Null,Null)
NodeLocation: 1328,544,1
NodeSize: 48,32
NodeInfo: 1,1,0,1,0,1,0,,0,,0
DefnState: 2,402,347,1075,572,0,DFNM
NodeColor: 1,49155,65535
ReformDef: [factor_fields,resistance]
Att_EditSliceState: [microbe,1,resistance,1,factor_fields,1]

FormNode Fo1760155571
Title: Exposure
Definition: 1
NodeLocation: 396,328,1
NodeSize: 332,16
NodeColor: 52427,13109,1
Original: res_microbe_expos
NodeFontColor: 0,0,0

Close iAM_AMR_MOD_FOOD