Hello,
I ran BS and Site model as per the tutorial on the main page without labeling any species. While looking at the output, I realized that it is always mentioning only one species as reference sequence. Can you please help in this regard?
The code used for the analyses are:
For site model
godon test M8 --m0-tree "$file" "$gene".tree > godon/"$gene"_branch_model
For BS model
godon test BS --m0-tree --all-branches "$file" "$gene".tree > godon/"$gene"_branch-site_model
Can you please tell me if I am missing some step?
Hello,
I ran BS and Site model as per the tutorial on the main page without labeling any species. While looking at the output, I realized that it is always mentioning only one species as reference sequence. Can you please help in this regard?
The code used for the analyses are:
For site model
godon test M8 --m0-tree "$file" "$gene".tree > godon/"$gene"_branch_modelFor BS model
godon test BS --m0-tree --all-branches "$file" "$gene".tree > godon/"$gene"_branch-site_modelCan you please tell me if I am missing some step?