updates

Author: msneubauer

.github/workflows/deploy.yml

@@ -1,41 +1,42 @@
 name: deploy-book
 
-# Only run this when the main branch changes
 on:
   push:
     branches:
     - main
-    # If your git repository has the Jupyter Book within some-subfolder next to
-    # unrelated files, you can make this run only if a file within that specific
-    # folder has been modified.
-    #
-    # paths:
-    # - some-subfolder/**
 
-# This job installs dependencies, builds the book, and pushes it to `gh-pages`
 jobs:
   deploy-book:
     runs-on: ubuntu-latest
     steps:
-    - uses: actions/checkout@v2
+      - uses: actions/checkout@v2
 
-    # Install dependencies
-    - name: Set up Python 3.8
-      uses: actions/setup-python@v2
-      with:
-        python-version: 3.8
+      # Set up Python 3.11 (needed for latest packages)
+      - name: Set up Python
+        uses: actions/setup-python@v4
+        with:
+          python-version: 3.11
 
-    - name: Install dependencies
-      run: |
-        pip install -r requirements.txt
+      # Install system dependencies required by PyTables
+      - name: Install system dependencies
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y libhdf5-dev build-essential python3-dev
 
-    # Build the book
-    - name: Build the book
-      run: |
-        jupyter-book build --config _config.yml --toc _toc.yml .
-    # Push the book's HTML to github-pages
-    - name: GitHub Pages action
-      uses: peaceiris/actions-gh-pages@v3.6.1
-      with:
-        github_token: ${{ secrets.GITHUB_TOKEN }}
-        publish_dir: ./_build/html
+      # Install Python dependencies
+      - name: Install dependencies
+        run: |
+          python -m pip install --upgrade pip wheel setuptools
+          pip install -r requirements.txt
+
+      # Build the book
+      - name: Build the book
+        run: |
+          jupyter-book build --config _config.yml --toc _toc.yml .
+
+      # Push to GitHub Pages
+      - name: GitHub Pages action
+        uses: peaceiris/actions-gh-pages@v3.6.1
+        with:
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_dir: ./_build/html