updates

Author: msneubauer

.github/workflows/deploy.yml

@@ -18,25 +18,34 @@ jobs:
         with:
           python-version: 3.11
 
-      # 3️⃣ Install system dependencies (needed by PyTables)
+      # 3️⃣ Cache pip packages for speed
+      - name: Cache pip
+        uses: actions/cache@v3
+        with:
+          path: ~/.cache/pip
+          key: ${{ runner.os }}-pip-${{ hashFiles('requirements.txt') }}
+          restore-keys: |
+            ${{ runner.os }}-pip-
+
+      # 4️⃣ Install system dependencies for PyTables
       - name: Install system dependencies
         run: |
           sudo apt-get update
           sudo apt-get install -y libhdf5-dev build-essential python3-dev
 
-      # 4️⃣ Install Python dependencies
-      - name: Install dependencies
+      # 5️⃣ Install Python dependencies
+      - name: Install Python dependencies
         run: |
           python -m pip install --upgrade pip wheel setuptools
           pip install -r requirements.txt
 
-      # 5️⃣ Build the Jupyter Book (using python -m to ensure it works in venv)
+      # 6️⃣ Build the Jupyter Book (skip notebook execution for speed)
       - name: Build the Jupyter Book
         run: |
-          python -m jupyter_book build --config _config.yml --toc _toc.yml .
+          python -m jupyter_book build --config _config.yml --toc _toc.yml --execute=never
 
-      # 6️⃣ Deploy to GitHub Pages
-      - name: GitHub Pages action
+      # 7️⃣ Deploy to GitHub Pages
+      - name: Deploy to GitHub Pages
         uses: peaceiris/actions-gh-pages@v3.6.1
         with:
           github_token: ${{ secrets.GITHUB_TOKEN }}

requirements.txt

@@ -1,27 +1,31 @@
-jupyter-book>=0.13.1,<0.14
+# Jupyter Book ecosystem
+jupyter-book==0.13.1
+notebook==7.3.1
+jupyterlab==4.1.4
+jupyter-server==2.15.0
+nbclient==0.8.0
+nbconvert==7.5.0
+nbformat==5.9.0
+traitlets==5.9.0
 
 # Core scientific packages
-numpy>=1.24.0,<1.25
-pandas>=2.0.3,<2.2
-scipy>=1.10.1,<1.13
-matplotlib>=3.7.1,<3.9
-seaborn>=0.12.0,<0.13
-scikit-learn>=1.2.0,<1.4
-tables>=3.10.0,<3.11
-
-# Notebook environment
-notebook>=7.2.0,<7.4
-jupyterlab>=4.1.0,<4.3
+numpy==1.24.4
+pandas==2.1.4
+scipy==1.12.0
+matplotlib==3.8.4
+seaborn==0.12.2
+scikit-learn==1.3.2
+tables==3.10.2
 
 # Networking / async dependencies
-anyio>=4.5.2,<5
-trio>=0.23.0,<1
-h11>=0.14,<1
+anyio==4.5.2
+trio==0.23.0
+h11==0.14.0
 
 # Argon2 password hashing
-argon2-cffi>=21.1.0,<26
-argon2-cffi-bindings>=21.1.0,<26
+argon2-cffi==21.1.0
+argon2-cffi-bindings==21.1.0
 
 # Utilities
-tqdm>=4.66,<5
-appnope>=0.1.0,<1   # macOS only
+tqdm==4.66.0
+appnope==0.1.4   # macOS only