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Enhance cellpose-appose plugin documentation
Updated plugin description and usage instructions for clarity.
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_pages/plugins/cellpose-appose.md

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forum-tag: fiji, cellpose
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This plugin install and run [cellpose](https://www.cellpose.org/) on 2D/3D in Fiji.
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Two version of cellpose is available:
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- Cellpose (v3, [doi:10.1038/s41592-025-02595-5](https://www.nature.com/articles/s41592-025-02595-5))
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This plugin install and run [cellpose](https://www.cellpose.org/) on an image (2D/3D/multi-colors/time) in Fiji.
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Two version of cellpose are available:
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- Cellpose (v3, [doi:10.1038/s41592-025-02595-5](https://www.nature.com/articles/s41592-025-02595-5))
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- Cellpose-SAM (v4, [doi:10.1101/2025.04.28.651001](https://www.biorxiv.org/content/10.1101/2025.04.28.651001v1))
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This plugin is based on [Appose](https://github.com/apposed/appose), that automatically install python environment and allows python script execution with shared objects with Fiji.
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## Usage
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From Fiji
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- Open the image that you want to process.
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The plugin handles images or movies that are 2D or 3D, that contains or not multiple channels. It can also have a temporal dimension. First open an image and then run the plugin. If you have several images opened when you launch the plgin, it will run on the active one.
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From Fiji:
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- Open the image that you want to process.
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- Launch one of the cellpose version available in the plugin:
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- `Plugins>Segmentation>Cellpose-Appose>Cellpose...`
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This option allows to run CellPose v3.
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The full official Cellpose 3 documentation is available [here](https://cellpose.readthedocs.io/en/v3.1.1.1/).
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- `Plugins>Segmentation>Cellpose-Appose>Cellpose-SAM...`
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This option allows to run CellPose v4 with SAM.
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The full official Cellpose 4 documentation is available [here](https://cellpose.readthedocs.io/en/latest/).
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- `Plugins>Segmentation>Cellpose-Appose>Cellpose...`
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This option allows to run CellPose v3.
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The full official Cellpose 3 documentation is available [here](https://cellpose.readthedocs.io/en/v3.1.1.1/).
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- `Plugins>Segmentation>Cellpose-Appose>Cellpose-SAM...`
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This option allows to run CellPose v4 with SAM.
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The full official Cellpose 4 documentation is available [here](https://cellpose.readthedocs.io/en/latest/).
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- Configure your Cellpose run through the Graphic Interface. _see [here](#parameters) for documentation_
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- Press "Ok" and Enjoy!
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{% include notice icon="info"

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