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22title : Cellpose-Appose
33description : PLugin to use Cellpose from Fiji relying on Appose.
4+ artifact : fiji.plugin:Cellpose_Appose
45categories : [Segmentation]
56---
67
@@ -29,10 +30,21 @@ Press `Apply changes` and restart Fiji when it's done.
2930From Fiji
3031- Open the image that you want to process.
3132- Launch one of the cellpose version available in the plugin:
32- - ` Plugins>Segmentation>Cellpose-Appose>Cellpose... `
33- - ` Plugins>Segmentation>Cellpose-Appose>Cellpose-SAM... `
33+ - ` Plugins>Segmentation>Cellpose-Appose>Cellpose... ` _ see [ here ] ( #cellpose ) for documentation _
34+ - ` Plugins>Segmentation>Cellpose-Appose>Cellpose-SAM... ` _ see [ here ] ( #cellpose-sam ) for documentation _
3435- Configure your Cellpose run through the Graphic Interface
3536- Press "Ok" and Enjoy!
3637
3738> [ !NOTE]
3839> The python environment will be automatically installed in your home ` .local\shared\appose ` directory and activated from the plugin when needed.
40+
41+
42+ ## Cellpose
43+
44+ The option ` Plugins>Segmentation>Cellpose-Appose>Cellpose... ` allows to run CellPose v3.
45+
46+ ## Cellpose-SAM
47+
48+ The option ` Plugins>Segmentation>Cellpose-Appose>Cellpose-SAM... ` allows to run CellPose v4 with SAM.
49+
50+ ### Cuda selection
You can’t perform that action at this time.
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