Minor formatting and line length adjustments

Author: ehrenfeu

src/imcflibs/imagej/objects3d.py

@@ -57,25 +57,25 @@ def imgplus_to_population3d(imp):
 
 
 def segment_3D_image(imp, title=None, min_thresh=1, min_vol=None, max_vol=None):
-    """Segment a 3D binary image to get a labelled stack
+    """Segment a 3D binary image to get a labelled stack.
 
     Parameters
     ----------
     imp : ImagePlus
-        Binary 3D stack
+        Binary 3D stack.
     title : str, optional
-        Title of the new image
+        Title of the new image.
     min_thresh : int, optional
-        Threshold to do segmentation, also allows for label filtering by default 1
+        Threshold to do segmentation, also allows for label filtering, by default 1.
     min_vol : int, optional
-        Volume (voxels) under which to filter objects, by default None
+        Volume (voxels) under which to filter objects, by default None.
     max_vol : int, optional
-        Volume above which to filter objects, by default None
+        Volume above which to filter objects, by default None.
 
     Returns
     -------
     ImagePlus
-        Segmented 3D labelled ImagePlus
+        Segmented 3D labelled ImagePlus.
     """
     cal = imp.getCalibration()
     img = ImageHandler.wrap(imp)
@@ -85,14 +85,14 @@ def segment_3D_image(imp, title=None, min_thresh=1, min_vol=None, max_vol=None):
     if min_vol:
         labeler.setMinSizeCalibrated(min_vol, img)
     if max_vol:
-        labeler.setMaxSizeCalibrated(max_vol, img) # Issue with typo an
-        # TODO: this method might not work on older Fiji deployments, needs testing on newer versions
-        # (deprecated .setMaxsize, it's .setMaxSizeCalibrated)
+        labeler.setMaxSizeCalibrated(max_vol, img)  # Issue with typo an
+        # TODO: this method might not work on older Fiji deployments, needs testing
+        # on newer versions (deprecated .setMaxsize, it's .setMaxSizeCalibrated)
         # TODO Keep it in mind for next Fiji deployment
         # labeler.setMaxsize(max_vol)
 
     seg = labeler.getLabels(img)
     seg.setScale(cal.pixelWidth, cal.pixelDepth, cal.getUnits())
     seg.setTitle(title)
 
-    return seg.getImagePlus()
+    return seg.getImagePlus()