@@ -683,8 +683,9 @@ def fmt_acitt_options(self):
683683 """Format Angle / Channel / Illumination / Tile / Timepoint options.
684684
685685 Build a string providing the `multiple_angles`, `multiple_channels`,
686- `multiple_illuminations_directions`, `multiple_tiles` and `multiple_timepoints` options
687- that can be used in a BDV-related `IJ.run` call.
686+ `multiple_illuminations_directions`, `multiple_tiles` and
687+ `multiple_timepoints` options that can be used in a BDV-related `IJ.run`
688+ call.
688689
689690 Returns
690691 -------
@@ -708,14 +709,15 @@ def fmt_acitt_options(self):
708709def check_processing_input (value , range_end ):
709710 """Sanitize and clarifies the acitt input selection.
710711
711- Check if the input is valid by checking the type and returning the expected output.
712+ Validate the input by checking the type and returning the expected output.
712713
713714 Parameters
714715 ----------
715716 value : str, int, list of int or list of str
716- Contains the list of input dimensions, the first input dimension of a range or a single channel
717+ Contains the list of input dimensions, the first input dimension of a
718+ range or a single channel.
717719 range_end : int or None
718- Contains the end of the range if need be
720+ Contains the end of the range if need be.
719721
720722 Returns
721723 -------
@@ -747,10 +749,11 @@ def check_processing_input(value, range_end):
747749
748750
749751def get_processing_settings (dimension , selection , value , range_end ):
750- """Get the variables corresponding to the dimension selection and processing mode.
752+ """Generate processing strings for selected dimension and processing mode.
751753
752- Get the processing option and dimension selection string that corresponds
753- to the selected processing mode.
754+ Generate the processing option and dimension selection strings that
755+ correspond to the selected processing mode and the given dimension
756+ selection.
754757
755758 Parameters
756759 ----------
@@ -761,14 +764,16 @@ def get_processing_settings(dimension, selection, value, range_end):
761764 generated string needs to be assembled according to the given dimension
762765 and value / range settings.
763766 value : str, int, list of int or list of str
764- Contains the list of input dimensions, the first input dimension of a range or a single channel
767+ The list of input dimensions, the first input dimension of a range or a
768+ single dimension value in case `selection == "single"` (e.g. for
769+ selecting a single channel).
765770 range_end : int or None
766- Contains the end of the range if need be
771+ Contains the end of the range if need be.
767772
768773 Returns
769774 -------
770- list of str
771- processing options string, dimension selection string
775+ tuple of str
776+ processing_option, dimension_select
772777 """
773778
774779 if selection == "single" :
@@ -806,9 +811,9 @@ def get_processing_settings(dimension, selection, value, range_end):
806811def backup_xml_files (source_directory , subfolder_name ):
807812 """Create a backup of BDV-XML files inside a subfolder of `xml-backup`.
808813
809- Copies all `.xml` and `.xml~` files to a subfolder with the given name inside a
810- folder called `xml-backup` in the source directory. Uses the `shutil.copy2()`
811- command, which will overwrite existing files.
814+ Copies all `.xml` and `.xml~` files to a subfolder with the given name
815+ inside a folder called `xml-backup` in the source directory. Uses the
816+ `shutil.copy2()` command, which will overwrite existing files.
812817
813818 Parameters
814819 ----------
@@ -854,8 +859,8 @@ def define_dataset_auto(
854859 with an extension.
855860 dataset_save_path : str
856861 Output path for the `.xml`.
857- bf_series_type : str
858- One of "Angles" or "Tiles", specifying how Bio-Formats interprets the series.
862+ bf_series_type : {`Angles`,`Tiles`}
863+ Defines how Bio-Formats interprets the series.
859864 timepoints_per_partition : int, optional
860865 Split the output dataset by timepoints. Use `0` for no split, resulting
861866 in a single HDF5 file containing all timepoints. By default `1`,
@@ -959,8 +964,8 @@ def define_dataset_manual(
959964 source_directory : str
960965 Path to the folder containing the file(s).
961966 image_file_pattern : str
962- Regular expression corresponding to the names of your files and how to read the
963- different dimensions.
967+ Regular expression corresponding to the names of your files and how to
968+ read the different dimensions.
964969 dataset_organisation : str
965970 Organisation of the dataset and the dimensions to process.
966971 Allows for defining the range of interest of the different dimensions.
@@ -1658,7 +1663,7 @@ def fuse_dataset_bdvp(
16581663):
16591664 """Export a BigDataViewer project using the BIOP Kheops exporter.
16601665
1661- This function uses the BIOP Kheops exporter to convert a BigDataViewer project into a
1666+ Use the BIOP Kheops exporter to convert a BigDataViewer project into
16621667 OME-TIFF files, with optional compression.
16631668
16641669 Parameters
@@ -1668,11 +1673,11 @@ def fuse_dataset_bdvp(
16681673 command : CommandService
16691674 The Scijava CommandService instance to execute the export command.
16701675 processing_opts : ProcessingOptions, optional
1671- Options defining which parts of the dataset to process. If None, default processing
1672- options will be used (process all angles, channels, etc.).
1676+ Options defining which parts of the dataset to process. If None, default
1677+ processing options will be used (process all angles, channels, etc.).
16731678 result_path : str, optional
1674- Path where to store the exported files. If None, files will be saved in the same
1675- directory as the input project.
1679+ Path where to store the exported files. If None, files will be saved in
1680+ the same directory as the input project.
16761681 compression : str, optional
16771682 Compression method to use for the TIFF files. Default is "LZW".
16781683
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