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15 | 15 | an Objects3DPopulation into an ImagePlus (2D/3D). |
16 | 16 | * `imcflibs.imagej.objects3d.imgplus_to_population3d` to get the |
17 | 17 | Objects3DPopulation from an ImagePlus (2D/3D). |
| 18 | +* New `imcflibs.imagej.bdv` submodule, providing BigDataViewer related |
| 19 | + functions: |
| 20 | + * `imcflibs.imagej.bdv.backup_xml_files` to create a backup of BDV-XML files |
| 21 | + * `imcflibs.imagej.bdv.define_dataset_auto` to run "Define Multi-View Dataset" |
| 22 | + using the "Auto-Loader" option. |
| 23 | + * `imcflibs.imagej.bdv.define_dataset_manual` to run "Define Multi-View |
| 24 | + Dataset" using the "Manual Loader" option. |
| 25 | + * `imcflibs.imagej.bdv.resave_as_h5` to resave the xml dataset in a new format |
| 26 | + (either all or single timepoints). |
| 27 | + * `imcflibs.imagej.bdv.flip_axes` tocall BigStitcher's "Flip Axes" command. |
| 28 | + * `imcflibs.imagej.bdv.phase_correlation_pairwise_shifts_calculation` to |
| 29 | + calculate pairwise shifts using Phase Correlation. |
| 30 | + * `imcflibs.imagej.bdv.filter_pairwise_shifts` for filtering pairwise shifts |
| 31 | + based on different thresholds. |
| 32 | + * `imcflibs.imagej.bdv.optimize_and_apply_shifts` to optimize shifts and apply |
| 33 | + them to a dataset. |
| 34 | + * `imcflibs.imagej.bdv.detect_interest_points` for running the "Detect |
| 35 | + Interest Points" command for registration. |
| 36 | + * `imcflibs.imagej.bdv.interest_points_registration` to run the "Register |
| 37 | + Dataset based on Interest Points" command. |
| 38 | + * `imcflibs.imagej.bdv.duplicate_transformations` for duplicating / |
| 39 | + propagating transformation parameters to other channels. |
| 40 | + * `imcflibs.imagej.bdv.fuse_dataset` to call BigStitcher's "Fuse Dataset" |
| 41 | + command. |
18 | 42 |
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19 | 43 | ## 1.4.0 |
20 | 44 |
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