@@ -29,24 +29,24 @@ detailed information, please refer to the updated API documentation.
2929 * ` imcflibs.imagej.misc.close_images ` for closing all ImagePluses from a list.
3030 * ` imcflibs.imagej.misc.get_threshold_value_from_method ` to get the value that
3131 a selected AutoThreshold method would be using.
32- * ` imcflibs.imagej.misc.write_ordereddict_to_csv ` to write data from an ordered
33- dictionary (or list of ordered dictionaries) to a CSV file.
32+ * ` imcflibs.imagej.misc.write_ordereddict_to_csv ` to write data from an
33+ ordered dictionary (or list of ordered dictionaries) to a CSV file.
3434 * ` imcflibs.imagej.misc.save_image_in_format ` to save an ImagePlus in a
3535 specified format, such as ImageJ-TIF or OME-TIFF etc., to a given directory.
3636 * ` imcflibs.imagej.misc.run_imarisconvert ` to convert a given file to Imaris
3737 format using the utility ImarisConvert. Method uses
3838 ` imcflibs.imagej.misc.locate_latest_imaris ` to find the path to the Imaris
3939 installation.
4040* New functions in ` imcflibs.imagej.labelimage ` :
41- * ` imcflibs.imagej.labelimage.cookie_cut_labels ` to use a label image as a mask
42- for another label image. Objects might get split or merged depending on the
43- mask.
44- * ` imcflibs.imagej.labelimage.binary_to_label ` for segmenting a binary image to
45- get a label image (2D/3D).
41+ * ` imcflibs.imagej.labelimage.cookie_cut_labels ` to use a label image as a
42+ mask for another label image. Objects might get split or merged depending on
43+ the mask.
44+ * ` imcflibs.imagej.labelimage.binary_to_label ` for segmenting a binary image
45+ to get a label image (2D/3D).
4646 * ` imcflibs.imagej.labelimage.relate_label_images ` to relate two label images
4747 (2D/3D) using the 3D Association plugin from the 3DImageJSuite.
48- * ` imcflibs.imagej.labelimage.dilate_labels_2d ` to dilate a label image slice by
49- slice. Works for 2D or 3D images.
48+ * ` imcflibs.imagej.labelimage.dilate_labels_2d ` to dilate a label image slice
49+ by slice. Works for 2D or 3D images.
5050* New ` imcflibs.imagej.objects3d ` submodule, providing:
5151 * ` imcflibs.imagej.objects3d.population3d_to_imgplus ` to turn an
5252 Objects3DPopulation into an ImagePlus (2D/3D).
@@ -98,8 +98,8 @@ detailed information, please refer to the updated API documentation.
9898 * ` imcflibs.imagej.trackmate.spot_filtering ` to create settings to filter
9999 detected spots based on optional thresholds for quality, area, circularity &
100100 intensity.
101- * ` imcflibs.imagej.trackmate.sparse_lap_tracker ` to create default settings for the
102- sparse LAP tracker.
101+ * ` imcflibs.imagej.trackmate.sparse_lap_tracker ` to create default settings
102+ for the sparse LAP tracker.
103103 * ` imcflibs.imagej.trackmate.track_filtering ` to create settings to filter
104104 detected tracks based upon optional distances, such as maximum linking, gap
105105 closing, track splitting & merging and maximum frame gap.
@@ -116,10 +116,10 @@ detailed information, please refer to the updated API documentation.
116116 credentials.
117117 * ` imcflibs.imagej.omerotools.fetch_image ` to fetch an image from OMERO using
118118 the image ID.
119- * ` imcflibs.imagej.omerotools.upload_image_to_omero ` to upload a local image to
120- OMERO and returning the new image ID.
121- * ` imcflibs.imagej.omerotools.add_keyvalue_annotation ` to add an annotation to an
122- OMERO object.
119+ * ` imcflibs.imagej.omerotools.upload_image_to_omero ` to upload a local image
120+ to OMERO and returning the new image ID.
121+ * ` imcflibs.imagej.omerotools.add_keyvalue_annotation ` to add an annotation to
122+ an OMERO object.
123123 * ` imcflibs.imagej.omerotools.delete_keyvalue_annotations ` to delete
124124 annotations from an OMERO object.
125125 * ` imcflibs.imagej.omerotools.find_dataset ` to find a dataset in OMERO using
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