Merge pull request #51 from imcf/deps/mocks

Use pre-releases of `imcf-fiji-mocks` in Python2 setups

Author: ehrenfeu

.github/workflows/pytest-python2.yml

@@ -25,7 +25,9 @@ jobs:
     - name: 🗃 Cache 📦 APT Packages
       uses: awalsh128/cache-apt-pkgs-action@v1.4.3
       with:
-        packages: xmlstarlet
+        packages:
+          xmlstarlet
+          # python3-tomli  # required only for 'parse-python-deps.py'
         version: 1.0
 
     - name: 🗃 Cache pyenv installation

poetry.lock

@@ -27,7 +27,6 @@ python-micrometa = "^15.2.2"
 sjlogging = ">=0.5.2"
 
 [tool.poetry.group.dev.dependencies]
-ipython = "^8.17.2"
 pytest = "^8.0.1"
 pytest-cov = "^6.0.0"
 

pyproject.toml

@@ -0,0 +1,23 @@
+#!/usr/bin/env python3
+
+"""Parse project dependencies and format them for usage with `pip install`."""
+
+# NOTE: requires Ubuntu package 'python3-tomli' to be installed!
+
+import tomli
+
+with open("pyproject.toml", "rb") as tomlfile:
+    pyproject = tomli.load(tomlfile)
+
+deps_pkg = pyproject["tool"]["poetry"]["dependencies"]
+deps_dev = pyproject["tool"]["poetry"]["group"]["dev"]["dependencies"]
+
+output = ""
+
+for deps in deps_pkg, deps_dev:
+    for pkg, ver in deps.items():
+        if ver[0] == "^":
+            ver = f">={ver[1:]}"
+        output = f'{output} {pkg}{ver}'
+
+print(output)

scripts/parse-python-deps.py

@@ -103,11 +103,14 @@ mv pyproject_.toml pyproject.toml
 echo "== * Removing 'setup.py'..."
 rm setup.py
 
+echo "== * Installing dependencies (incl. pre-release and dev versions)..."
+vpip install --upgrade --pre \
+    imcf-fiji-mocks
+
 echo "== * Installing dependencies..."
 vpip install \
     python-micrometa \
     sjlogging \
-    "imcf-fiji-mocks>=0.3.0" \
     olefile==0.46 \
     pytest \
     pytest-cov \