diff --git a/intermine_builder/build.sh b/intermine_builder/build.sh index 0879302..503ba9a 100644 --- a/intermine_builder/build.sh +++ b/intermine_builder/build.sh @@ -85,7 +85,7 @@ if [ ! -f /home/intermine/.intermine/${MINE_NAME:-biotestmine}.properties ]; the cp /home/intermine/intermine/configs/${MINE_NAME:-biotestmine}.properties /home/intermine/.intermine/ fi - echo -e "$(date +%Y/%m/%d-%H:%M) Set properties in .intermine/${MINE_NAME:-biotestmine}.properties to\nPSQL_DB_NAME\tbiotestmine\nPSQL_USER\t$PSQL_USER\nPSQL_PWD\t$PSQL_PWD\nTOMCAT_USER\t$TOMCAT_USER\nTOMCAT_PWD\t$TOMCAT_PWD\nGRADLE_OPTS\t$GRADLE_OPTS" #>> /home/intermine/intermine/build.progress + echo -e "$(date +%Y/%m/%d-%H:%M) Set properties in .intermine/${MINE_NAME:-biotestmine}.properties to\nPSQL_DB_NAME\t${MINE_NAME}\nPSQL_USER\t$PSQL_USER\nPSQL_PWD\t$PSQL_PWD\nTOMCAT_USER\t$TOMCAT_USER\nTOMCAT_PWD\t$TOMCAT_PWD\nGRADLE_OPTS\t$GRADLE_OPTS" #>> /home/intermine/intermine/build.progress #sed -i "s/PSQL_PORT/$PGPORT/g" /home/intermine/.intermine/${MINE_NAME:-biotestmine}.properties sed -i "s/PSQL_DB_NAME/${MINE_NAME:-biotestmine}/g" /home/intermine/.intermine/${MINE_NAME:-biotestmine}.properties @@ -138,7 +138,7 @@ else if [ ! -d /home/intermine/intermine/data/malaria ]; then echo "$(date +%Y/%m/%d-%H:%M) Copy malria-data to ~/data" #>> /home/intermine/intermine/build.progress mkdir -p /home/intermine/intermine/data/ - cp /home/intermine/intermine/biotestmine/data/malaria-data.tar.gz /home/intermine/intermine/data/ + cp /home/intermine/intermine/${MINE_NAME:-biotestmine}/data/malaria-data.tar.gz /home/intermine/intermine/data/ cd /home/intermine/intermine/data/ tar -xf malaria-data.tar.gz rm malaria-data.tar.gz