From 6ba590c73d32659c5bbd998fa0af50da21a462da Mon Sep 17 00:00:00 2001 From: Manabu Ishii Date: Sun, 24 Mar 2024 14:24:44 +0900 Subject: [PATCH 1/2] Fix message --- intermine_builder/build.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/intermine_builder/build.sh b/intermine_builder/build.sh index 0879302..b83df04 100644 --- a/intermine_builder/build.sh +++ b/intermine_builder/build.sh @@ -85,7 +85,7 @@ if [ ! -f /home/intermine/.intermine/${MINE_NAME:-biotestmine}.properties ]; the cp /home/intermine/intermine/configs/${MINE_NAME:-biotestmine}.properties /home/intermine/.intermine/ fi - echo -e "$(date +%Y/%m/%d-%H:%M) Set properties in .intermine/${MINE_NAME:-biotestmine}.properties to\nPSQL_DB_NAME\tbiotestmine\nPSQL_USER\t$PSQL_USER\nPSQL_PWD\t$PSQL_PWD\nTOMCAT_USER\t$TOMCAT_USER\nTOMCAT_PWD\t$TOMCAT_PWD\nGRADLE_OPTS\t$GRADLE_OPTS" #>> /home/intermine/intermine/build.progress + echo -e "$(date +%Y/%m/%d-%H:%M) Set properties in .intermine/${MINE_NAME:-biotestmine}.properties to\nPSQL_DB_NAME\t${MINE_NAME}\nPSQL_USER\t$PSQL_USER\nPSQL_PWD\t$PSQL_PWD\nTOMCAT_USER\t$TOMCAT_USER\nTOMCAT_PWD\t$TOMCAT_PWD\nGRADLE_OPTS\t$GRADLE_OPTS" #>> /home/intermine/intermine/build.progress #sed -i "s/PSQL_PORT/$PGPORT/g" /home/intermine/.intermine/${MINE_NAME:-biotestmine}.properties sed -i "s/PSQL_DB_NAME/${MINE_NAME:-biotestmine}/g" /home/intermine/.intermine/${MINE_NAME:-biotestmine}.properties From 19783a4defb06b999720e0dd3d526a6535b827d6 Mon Sep 17 00:00:00 2001 From: Manabu Ishii Date: Sun, 24 Mar 2024 14:28:31 +0900 Subject: [PATCH 2/2] Update to use MINE_NAME --- intermine_builder/build.sh | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/intermine_builder/build.sh b/intermine_builder/build.sh index b83df04..503ba9a 100644 --- a/intermine_builder/build.sh +++ b/intermine_builder/build.sh @@ -138,7 +138,7 @@ else if [ ! -d /home/intermine/intermine/data/malaria ]; then echo "$(date +%Y/%m/%d-%H:%M) Copy malria-data to ~/data" #>> /home/intermine/intermine/build.progress mkdir -p /home/intermine/intermine/data/ - cp /home/intermine/intermine/biotestmine/data/malaria-data.tar.gz /home/intermine/intermine/data/ + cp /home/intermine/intermine/${MINE_NAME:-biotestmine}/data/malaria-data.tar.gz /home/intermine/intermine/data/ cd /home/intermine/intermine/data/ tar -xf malaria-data.tar.gz rm malaria-data.tar.gz