From e4f5104a6c52b8bd5fe7d0ace4524a997d3ad9e0 Mon Sep 17 00:00:00 2001
From: mikailweston <mikailweston@gmail.com>
Date: Tue, 5 Oct 2021 16:34:42 +0100
Subject: [PATCH] Tprime gate error

Tprime input doesn't include gate and defaults to '0'
---
 ecephys_spike_sorting/scripts/sglx_multi_run_pipeline.py | 1 +
 1 file changed, 1 insertion(+)

diff --git a/ecephys_spike_sorting/scripts/sglx_multi_run_pipeline.py b/ecephys_spike_sorting/scripts/sglx_multi_run_pipeline.py
index c8e44dc9..c6d022d9 100644
--- a/ecephys_spike_sorting/scripts/sglx_multi_run_pipeline.py
+++ b/ecephys_spike_sorting/scripts/sglx_multi_run_pipeline.py
@@ -365,6 +365,7 @@
                                            spikeGLX_data = True,
                                            input_meta_path = input_meta_fullpath,
                                            catGT_run_name = spec[0],
+                                           gate_string = spec[1],
     									   kilosort_output_directory=kilosort_output_dir,
                                            extracted_data_directory = catGT_dest,
                                            tPrime_im_ex_list = im_ex_list,