Add note about updating dependencies in pyproject.toml

Author: ehrenfeu

pyproject.toml

@@ -20,6 +20,7 @@ version = "0.0.0"
 # - or: python = ">=3.10"
 
 [tool.poetry.dependencies]
+# IMPORTANT: see the "poetry.lock.md" file when changing dependencies!!!
 imcf-fiji-mocks = ">=0.13.0"
 python = ">=2.7"
 python-micrometa = "^15.2.3"
@@ -54,3 +55,9 @@ ignore = [
 
 [tool.ruff.lint.pydocstyle]
 convention = "numpy"
+
+[tool.coverage.report]
+exclude_also = [
+  'no-cover:jython-only',
+  'cover:jython',
+]

src/imcflibs/imagej/objects3d.py

@@ -80,7 +80,7 @@ def segment_3d_image(
     max_vol=None,
     remove_touching_borders=False,
     remove_touching_borders_z=False,
-):  # pragma: no cover (Jython-only)
+):  # cover:jython
     """Segment a 3D binary image to get a labelled stack.
 
     Parameters