Merge remote-tracking branch 'jwpeterson/citations' into devel

Author: jwpeterson

doc/citations/maybe.bib

@@ -85,6 +85,7 @@ @Article{Jokisaari_2025
 
 % Maybe MOOSE
 % The preprint's reference section is missing.
+% See also: WTang_2023
 @Article{WTang_2025,
   author  = {Wei Tang and Lingfeng Wang and Shen Sun and Liucheng Zhou and Min Yi},
   title   = {{Macroscopically modeling fatigue life of additively manufactured metals: Pore-defect informed phase-field model}},
@@ -175,17 +176,6 @@ @Article{WXiong_2025
   note    = {\url{https://doi.org/10.1007/s11433-024-2509-2}}
 }
 
-% Maybe libMesh
-% https://www.proquest.com/openview/fd3520d42a2c1869644db89b01d98b6a
-@phdthesis{Kubo_thesis,
-  author = {Allison Kubo},
-  school = {University of Oregon},
-  title  = {Multiscale modeling of high and low {Reynolds} number in small and large volume volcanic events},
-  note   = {\url{https://tinyurl.com/8a9txpdy}},
-  month  = sep,
-  year   = 2024
-}
-
 % Maybe MOOSE
 % Requested full-text on ResearchGate
 @Article{JXu_2024,
@@ -270,20 +260,6 @@ @Article{Pham_2024
   note    = {\url{https://doi.org/10.1007/s11664-024-11301-8}}
 }
 
-% Maybe MOOSE
-% "Crystal plasticity finite element (CPFE) calculations are used to rationalise the observations..."
-@InProceedings{Utada_2024,
-  author    = {Satoshi Utada and Qinan Han and Ang Li and Melvin Z. Miquel and Celal Polato{\u{g}}lu and Magnus Hasselqvist and Yuanbo T. Tang and Roger C. Reed},
-  title     = {{Tensile testing of Ni-based single crystal superalloys: What is the correct ``point of view''?}},
-  booktitle = {{Proceedings of the 15th International Symposium on Superalloys (Superalloys 2024)}},
-  address   = {Seven Springs, Pennsylvania},
-  editor    = {Jonathan Cormier and Ian Edmonds and Stephane Forsik and Paraskevas Kontis and Corey O'Connell and Timothy Smith and Akane Suzuki and Sammy Tin and Jian Zhang},
-  pages     = {427--438},
-  month     = sep # {~8--12,},
-  year      = 2024,
-  note      = {\url{https://doi.org/10.1007/978-3-031-63937-1_40}}
-}
-
 % Maybe MOOSE
 % Requested full-text on ResearchGate
 @InProceedings{SZhang_2024,
@@ -298,20 +274,6 @@ @InProceedings{SZhang_2024
   note      = {\url{https://doi.org/10.1007/978-981-97-3397-2_9}}
 }
 
-% Maybe MOOSE
-% Requested full-text on ResearchGate
-@Article{Davis_2024,
-  author  = {Andrew Davis and Chris Waldon and Stuart I. Muldrew and Bhavin S. Patel and Patricia Verrier and Thomas R. Barrett and Gerasimos A. Politis },
-  title   = {Digital: accelerating the pathway},
-  journal = {Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences},
-  month   = oct,
-  year    = 2024,
-  volume  = 382,
-  number  = 2280,
-  pages   = {20230411 (xx pages)},
-  note    = {\url{https://doi.org/10.1098/rsta.2023.0411}, Theme issue: ``Delivering Fusion Energy -- The Spherical Tokamak for Energy Production (STEP)''}
-}
-
 % Maybe MOOSE/phase_field
 % Requested full-text on ResearchGate
 @Article{Dillon_2024,
@@ -528,32 +490,6 @@ @Article{YZhong_2024
   note    = {\url{https://doi.org/10.1016/j.ijmecsci.2024.109001}}
 }
 
-% Maybe MOOSE
-% Requested full-text on ResearchGate
-@Article{HYang_2024,
-  author  = {Haiying Yang and Michael J. Demkowicz},
-  title   = {Lamellar decomposition far from thermodynamic equilibrium},
-  journal = {Computational Materials Science},
-  month   = jan,
-  year    = 2024,
-  volume  = 233,
-  pages   = {112759 (xx pages)},
-  note    = {\url{https://doi.org/10.1016/j.commatsci.2023.112759}}
-}
-
-% Maybe libmesh
-% Requested full-text on ResearchGate
-@Article{Proschel_2024,
-  author  = {Alexander Pr{\"{o}}schel and Miu {Lun Lau} and Donna {Post Guillen} and David C. Dunand},
-  title   = {Combining direct ink writing with reactive melt infiltration to create architectured thermoelectric legs},
-  journal = {Chemical Engineering Journal},
-  month   = jan,
-  year    = 2024,
-  volume  = 479,
-  pages   = {147845 (xx pages)},
-  note    = {\url{https://doi.org/10.1016/j.cej.2023.147845}}
-}
-
 % Maybe libmesh
 @phdthesis{Whalen_thesis,
   author = {Stephen Michael Whalen},
@@ -590,19 +526,6 @@ @Article{Ip_2023
   note    = {\url{https://doi.org/10.1016/j.jmps.2023.105441}}
 }
 
-% Maybe MOOSE
-% Requested full-text on ResearchGate
-@Article{JKe_2023,
-  author  = {Jia-Hong Ke},
-  title   = {{Microstructure modeling of nuclear structural materials: Recent progress and future directions}},
-  journal = {Computational Materials Science},
-  month   = oct,
-  year    = 2023,
-  volume  = 230,
-  pages   = {112503 (xx pages)},
-  note    = {\url{https://doi.org/10.1016/j.commatsci.2023.112503}}
-}
-
 % Maybe libMesh
 % Requested full-text on ResearchGate
 @Article{Kang_2023,

doc/citations/preprints.bib

@@ -1,5 +1,28 @@
 % Preprints
 
+% MOOSE/Zapdos
+% "... a 0D chemistry model of the plasma and effluent was created using the Zapdos application. Zapdos is ... on the ... (MOOSE) framework ..."
+@Article{Robinson_2025,
+  author  = {Conner D. Robinson and Nicholas L. Sponsel and Katharina Stapelmann},
+  title   = {{Bubbling water-treating DBD plasma device optimization using experimental and computational methods}},
+  journal = {Plasma Processes and Polymers},
+  month   = feb,
+  year    = 2025,
+  pages   = {e70000 (10 pages)},
+  note    = {\url{https://doi.org/10.1002/ppap.70000}}
+}
+
+% MOOSE
+@Article{TianchenHu_2025,
+  author  = {Tianchen Hu and Mark C. Messner},
+  title   = {{A simple, scalable large deformation solid mechanics implementation in the MOOSE framework}},
+  journal = {ACM Transactions on Mathematical Software},
+  month   = feb,
+  year    = 2025,
+  pages   = {xx (22 pages)},
+  note    = {\url{https://doi.org/10.1145/3716308}}
+}
+
 % MOOSE/Cardinal
 % "we use the Cardinal ... (MOOSE) application ... to run coupled simulations"
 % To be combined with: Leite_2023
@@ -23,18 +46,6 @@ @Article{ShuaiyiLu_2025
   note    = {\url{https://doi.org/10.1002/ghg.2328}}
 }
 
-% MOOSE
-% "Complex arithmetic is not directly implemented in most computational simulation software, including the one employed here, ... (MOOSE, ...)"
-@Article{Shah_2025,
-  author  = {Haritya Shah and Murthy Guddati},
-  title   = {{Towards linking histological changes to liver viscoelasticity: A hybrid analytical-computational micromechanics approach}},
-  journal = {Physics in Medicine \& Biology},
-  month   = jan,
-  year    = 2025,
-  pages   = {xx (19 pages)},
-  note    = {\url{https://doi.org/10.1088/1361-6560/adaad3}, ArXiv e-print: \url{https://arxiv.org/abs/2411.13530}}
-}
-
 % MOOSE
 % This is a conference paper from PHYSOR 2024
 @Article{Jaradat_2024c,
@@ -56,17 +67,6 @@ @Article{Martin_2025
   note    = {\url{https://doi.org/10.1080/00295450.2024.2425916}}
 }
 
-% MOOSE
-@Article{Mostafavi_2025,
-  author  = {Ali Mostafavi and Mohammadmahdi Ranjbar and Vitaliy Yurkiv and Alexander L. Yarin and Farzad Mashayek},
-  title   = {{MOOSE-based finite element framework for mass-conserving two-phase flow simulations on adaptive grids using the diffuse interface approach and a Lagrange multiplier}},
-  journal = {Journal of Computational Physics},
-  month   = jan,
-  year    = 2025,
-  pages   = {113755 (xx pages)},
-  note    = {\url{https://doi.org/10.1016/j.jcp.2025.113755}}
-}
-
 % MOOSE/BlackBear
 % "... these models were implemented in BlackBear ... which is a code based on ... (MOOSE) ..."
 @Article{Jain_2025,
@@ -158,18 +158,6 @@ @Article{Martinez-Loran_2024
   note    = {\url{https://doi.org/10.1080/15361055.2024.2395133}}
 }
 
-% MOOSE
-% "For structural analysis, an open-source finite element code developed by Idaho National Laboratory, MOOSE"
-@Article{WDu_2024,
-  author  = {Wenchao Du and Joseph Hayes and Kyle Myers and Bipul Barua and Wenhua Yu and Dileep Singh},
-  title   = {{Development of a high-temperature Inconel 625 heat exchanger by model design and binder jetting additive manufacturing}},
-  journal = {Materials \& Design},
-  month   = sep,
-  year    = 2024,
-  pages   = {113333 (xx pages)},
-  note    = {\url{https://doi.org/10.1016/j.matdes.2024.113333}}
-}
-
 % MOOSE
 % "The simulations for mechanical responses were performed under the open-source platform MOOSE."
 @Article{LWang_2024,

doc/citations/twentyfive.bib

@@ -1,3 +1,80 @@
+% MOOSE
+% "For structural analysis, an open-source finite element code developed by Idaho National Laboratory, MOOSE"
+@Article{WDu_2025,
+  author  = {Wenchao Du and Joseph Hayes and Kyle Myers and Bipul Barua and Wenhua Yu and Dileep Singh},
+  title   = {{Development of a high-temperature Inconel 625 heat exchanger by model design and binder jetting additive manufacturing}},
+  journal = {Materials \& Design},
+  month   = mar,
+  year    = 2025,
+  volume  = 251,
+  pages   = {113333 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.matdes.2024.113333}}
+}
+
+% MOOSE/phase_field
+% "... a qualitative two-dimensional phase-field (PF) model was employed using ... (MOOSE) ..."
+@Article{Bandala_2025,
+  author  = {Erick Bandala and Lily Raymond and Kellen Mitchell and Fazlay Rubbi and John Thella and Bankole O. Osho and Amanendra K. Kushwaha and Mohammadreza Elahifard and Ji Su and Xing Zhang and Pradeep L. Menezes and Xiaoliang Wang and Pengbo Chu and Yiliang Liao and Yifei Jin},
+  title   = {Distance-controlled direct ink writing of titanium alloy with enhanced shape diversity and controllable porosity},
+  journal = {npj Advanced Manufacturing},
+  month   = feb,
+  year    = 2025,
+  volume  = 2,
+  number  = 1,
+  pages   = {4 (10 pages)},
+  note    = {\url{https://doi.org/10.1038/s44334-025-00016-1}}
+}
+
+% MOOSE/Griffin
+@Article{YSJung_2025,
+  author  = {Yeon Sang Jung and Yaqi Wang and Changho Lee},
+  title   = {Development of transport solver based on hybrid finite element method in {Griffin}},
+  journal = {Annals of Nuclear Energy},
+  month   = may,
+  year    = 2025,
+  volume  = 214,
+  pages   = {111128 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.anucene.2024.111128}}
+}
+
+% MOOSE
+@Article{Mostafavi_2025,
+  author  = {Ali Mostafavi and Mohammadmahdi Ranjbar and Vitaliy Yurkiv and Alexander L. Yarin and Farzad Mashayek},
+  title   = {{MOOSE-based finite element framework for mass-conserving two-phase flow simulations on adaptive grids using the diffuse interface approach and a Lagrange multiplier}},
+  journal = {Journal of Computational Physics},
+  month   = apr,
+  year    = 2025,
+  volume  = 527,
+  pages   = {113755 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.jcp.2025.113755}}
+}
+
+% MOOSE
+% "The ... problem ... has been implemented ... within ... MFM-FM ... based on the MOOSE framework ..."
+% author:yang author:chen author:foster multiphysics simulations microstructure
+@Misc{Kuhn_2025,
+  author       = {Patrick K{\"{u}}hn and Yangyiwei Yang and Guanyu Chen and Shanelle N. Foster and Herbert Egger and Bai-Xiang Xu},
+  title        = {Multiphysics simulations of microstructure influence on hysteresis and eddy current losses of electrical steel},
+  month        = feb,
+  year         = 2025,
+  howpublished = {ArXiv e-print},
+  note         = {\url{https://arxiv.org/abs/2502.01559}}
+}
+
+% MOOSE
+% "Complex arithmetic is not directly implemented in most computational simulation software, including the one employed here, ... (MOOSE, ...)"
+@Article{Shah_2025,
+  author  = {Haritya Shah and Murthy Guddati},
+  title   = {{Towards linking histological changes to liver viscoelasticity: A hybrid analytical-computational micromechanics approach}},
+  journal = {Physics in Medicine \& Biology},
+  month   = feb,
+  year    = 2025,
+  volume  = 70,
+  number  = 4,
+  pages   = {045005 (19 pages)},
+  note    = {\url{https://doi.org/10.1088/1361-6560/adaad3}, ArXiv e-print: \url{https://arxiv.org/abs/2411.13530}}
+}
+
 % MOOSE
 % "In the final step, the trained DNN acts as a surrogate model within the FEM framework in ... (MOOSE)."
 % https://www.christianpeco.com/uploads/2/3/6/1/23617100/a_bio-lattice_deep_learning_framework_for_modeling_discrete_biological_materials.pdf
@@ -39,6 +116,7 @@ @Article{Freile_2025
 
 % MOOSE
 % "The order parameters ... are generated using ... MOOSE ..."
+% author:kadambi author:schwen phase-field modeling Fe-Cr-Ni
 @Misc{Kadambi_2025,
   author       = {Sourabh Bhagwan Kadambi and Daniel Schwen and Jia-Hong Ke and Lingfeng He and Andrea M. Jokisaari},
   title        = {{Phase-field modeling of radiation-induced composition redistribution: An application to additively manufactured austenitic Fe-Cr-Ni}},
@@ -458,7 +536,7 @@ @Article{YWang_2025
 
 % MOOSE
 % "A multi-physics model including neutronics, fuel rod heat transfer, mechanics and fluid flow has been developed based on the MOOSE framework."
-@Article{THu_2025,
+@Article{TianliangHu_2025,
   author  = {Tianliang Hu and Duoyu Jiang and Xinyi Zhang and Zhaohao Wang and Lipeng Wang and Lu Cao and Da Li and Lixin Chen},
   title   = {{Steady-state analysis of Xi'an Pulse Reactor based on the multi-physics coupling method}},
   journal = {Annals of Nuclear Energy},

doc/citations/twentyfour.bib

@@ -1,3 +1,55 @@
+% MOOSE
+% "... apply state-of-the-art computer modeling to cooling dikes using ... (MOOSE) porous flow and Navier-Stokes modules."
+% https://www.proquest.com/openview/fd3520d42a2c1869644db89b01d98b6a
+@phdthesis{Kubo_thesis,
+  author = {Allison Kubo},
+  school = {University of Oregon},
+  title  = {Multiscale modeling of high and low {Reynolds} number in small and large volume volcanic events},
+  note   = {\url{https://tinyurl.com/8a9txpdy}},
+  month  = sep,
+  year   = 2024
+}
+
+% MOOSE
+% "The strategy for STEP [Spherical Tokamak for Energy Production] has thus been to use a pragmatic compromise of the two approaches, by developing a suite of applications within MOOSE..."
+@Article{Davis_2024,
+  author  = {Andrew Davis and Chris Waldon and Stuart I. Muldrew and Bhavin S. Patel and Patricia Verrier and Thomas R. Barrett and Gerasimos A. Politis },
+  title   = {Digital: accelerating the pathway},
+  journal = {Philosophical Transactions of the Royal Society A: Mathematical, Physical and Engineering Sciences},
+  month   = oct,
+  year    = 2024,
+  volume  = 382,
+  number  = 2280,
+  pages   = {20230411 (19 pages)},
+  note    = {\url{https://doi.org/10.1098/rsta.2023.0411}, Theme issue: ``Delivering Fusion Energy -- The Spherical Tokamak for Energy Production (STEP)''}
+}
+
+% MOOSE
+% "All simulations are performed using the MOOSE software ..."
+@Article{HYang_2024,
+  author  = {Haiying Yang and Michael J. Demkowicz},
+  title   = {Lamellar decomposition far from thermodynamic equilibrium},
+  journal = {Computational Materials Science},
+  month   = jan,
+  year    = 2024,
+  volume  = 233,
+  pages   = {112759 (25 pages)},
+  note    = {\url{https://doi.org/10.1016/j.commatsci.2023.112759}}
+}
+
+% MOOSE
+% "Finite element modeling (FEM) of leg geometries was conducted using the ... (MOOSE) Framework..."
+@Article{Proschel_2024,
+  author  = {Alexander Pr{\"{o}}schel and Miu {Lun Lau} and Donna {Post Guillen} and David C. Dunand},
+  title   = {Combining direct ink writing with reactive melt infiltration to create architectured thermoelectric legs},
+  journal = {Chemical Engineering Journal},
+  month   = jan,
+  year    = 2024,
+  volume  = 479,
+  pages   = {147845 (25 pages)},
+  note    = {\url{https://doi.org/10.1016/j.cej.2023.147845}}
+}
+
 % MOOSE
 % "This paper details implementing a phase field model ... within ... (MOOSE) ..."
 @InProceedings{Sidharth_2024,
@@ -2649,6 +2701,20 @@ @Article{Roy_2024
   note    = {\url{https://doi.org/10.1016/j.jnucmat.2024.154970}}
 }
 
+% MOOSE/ELK
+% "ELK is based on the open-source MOOSE framework..."
+% Similar to the paper below with some of the same authors, but different conference.
+% https://www.researchgate.net/publication/388801283_Analysis_and_simulations_aimed_at_electrical_fracturing_for_enhanced_geothermal_systems
+@InProceedings{Fournier_2024,
+  author    = {Aim{\'{e}} Fournier and Laurent Demanet and Chunfang Meng and Robert Egert and Wencheng Jin and Paris Smalls},
+  title     = {Analysis and simulations aimed at electrical fracturing for enhanced geothermal systems},
+  booktitle = {{Proceedings of the 2024 Applied Energy Symposium: MIT A+B}},
+  address   = {Cambridge, Massachusetts},
+  month     = aug # {~12--15,},
+  year      = 2024,
+  note      = {\url{https://tinyurl.com/4cmcecnj}}
+}
+
 % MOOSE
 % "This study introduces ELK (ELectrical fracKing), an ... application ... based on the open-source MOOSE framework
 % https://pangea.stanford.edu/ERE/db/GeoConf/papers/SGW/2024/Egert.pdf

doc/citations/twentythree.bib

@@ -1,3 +1,16 @@
+% MOOSE
+% "The concurrent simulation approach is facilitated ... using the MultiApp and Transfers systems from the MOOSE framework..."
+@Article{JKe_2023,
+  author  = {Jia-Hong Ke},
+  title   = {{Microstructure modeling of nuclear structural materials: Recent progress and future directions}},
+  journal = {Computational Materials Science},
+  month   = oct,
+  year    = 2023,
+  volume  = 230,
+  pages   = {112503 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.commatsci.2023.112503}}
+}
+
 % MOOSE/GOLEM
 % "The investigation ... using the GOLEM open-source FEM package resulted in several significant findings, ..."
 % https://www.researchgate.net/publication/388110336_Thermal-Hydro-Mechanical_coupled_numerical_analysis_of_a_faulted_zone_in_a_Quebec%27s_potential_geothermal_engineering_site