Merge remote-tracking branch 'jwpeterson/citations' into devel

Author: jwpeterson

doc/citations/maybe.bib

@@ -2,17 +2,74 @@
 % that they actually use libMesh, and we can't check because they are
 % behind a paywall/not on sci-hub.
 
-% Maybe BISON
-% Requested full-text on ResearchGate
-@Article{Kocevski_2023,
-  author  = {Vancho Kocevski and Michael W.D. Cooper and David A. Andersson},
-  title   = {{Modeling of fission gas diffusion and release for Gd$_2$O$_3$ doped UO$_2$}},
+% Maybe MOOSE
+@Article{Li_2023,
+  author  = {Yongchang Li and Zhihan Hu and Aaron French and Kenneth Cooper and Frank A. Garner and Lin Shao},
+  title   = {Effect of the free surface on near-surface void swelling in self-ion irradiated single crystal pure iron considering the carbon effect},
   journal = {Journal of Nuclear Materials},
-  month   = oct,
+  month   = nov,
+  year    = 2023,
+  volume  = 585,
+  pages   = {154594 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.jnucmat.2023.154594}}
+}
+
+% Maybe MOOSE
+% This is a PHYSOR 2022 conference paper that was published in NSE
+@Article{Kowal_2023,
+  author  = {Peter J. Kowal and Camden E. Blake and Kurt A. Dominesey and Robert A. Lefebvre and Forrest B. Brown and Wei Ji},
+  title   = {{Enhancing Monte Carlo workflows for nuclear reactor analysis with metamodel-driven modeling}},
+  journal = {Nuclear Science and Engineering},
+  month   = jul,
+  year    = 2023,
+  volume  = 197,
+  number  = 8,
+  pages   = {1600--1620},
+  note    = {Special issue featuring papers from the 2022 International Conference on Physics of Reactors (PHYSOR 2022), \url{https://doi.org/10.1080/00295639.2022.2153617}}
+}
+
+% Maybe MOOSE
+% This is a PHYSOR 2022 conference paper that was published in NSE
+@Article{Bess_2023,
+  author  = {John D. Bess and Andrew S. Chipman and Chad L. Pope and Colby B. Jensen and Takayuki Ozawa and Shun Hirooka and Masato Kato},
+  title   = {{EBR-II MOX fuel characterization enabling ARES Phase I testing}},
+  journal = {Nuclear Science and Engineering},
+  month   = jul,
+  year    = 2023,
+  volume  = 197,
+  number  = 8,
+  pages   = {1845--1872},
+  note    = {Special issue featuring papers from the 2022 International Conference on Physics of Reactors (PHYSOR 2022), \url{https://doi.org/10.1080/00295639.2022.2156240}}
+}
+
+% Maybe MOOSE
+% Got PDF copy of the paper from the authors on ResearchGate. It does cite MOOSE, but there is no sentence
+% confirming that MOOSE is actually used for the phase-field simulations which are shown in the paper, so
+% I have asked Fangping Zhuo for further clarification.
+@Article{FZhuo_2023,
+  author  = {Fangping Zhuo and Xiandong Zhou and Shuang Gao and Felix Dietrich and Pedro B. Groszewicz and Lovro Fulanovi{\'{c}} and Patrick Breckner and Bai-Xiang Xu and Hans-Joachim Kleebe and Dragan Damjanovic and J{\"{u}}rgen R{\"{o}}del},
+  title   = {Intrinsic-strain engineering by dislocation imprint in bulk ferroelectrics},
+  journal = {Physical Review Letters},
+  month   = jul,
   year    = 2023,
-  volume  = 584,
-  pages   = {154575},
-  note    = {\url{https://doi.org/10.1016/j.jnucmat.2023.154575}}
+  volume  = 131,
+  number  = 1,
+  pages   = {016801 (7 pages)},
+  note    = {\url{https://doi.org/10.1103/PhysRevLett.131.016801}}
+}
+
+% Maybe libMesh
+% Requested full-text on ResearchGate
+@Article{Tzirakis_2023,
+  author  = {Konstantinos Tzirakis and Christos Panagiotis Papanikas and Vangelis Sakkalis and Eleftheria Tzamali and Yannis Papaharilaou and Alfonso Caiazzo and Triantafyllos Stylianopoulos and Vasileios Vavourakis },
+  title   = {An adaptive semi-implicit finite element solver for brain cancer progression modeling},
+  journal = {International Journal for Numerical Methods in Biomedical Engineering},
+  month   = jul,
+  year    = 2023,
+  volume  = 39,
+  number  = 7,
+  pages   = {e3734 (xx pages)},
+  note    = {\url{https://doi.org/10.1002/cnm.3734}}
 }
 
 % Maybe libMesh

doc/citations/preprints.bib

@@ -1,5 +1,39 @@
 % Preprints
 
+% MOOSE/KRAKEN
+% "... we have developed our own multiphysics simulation platform, Kraken, built on top of ... (MOOSE) ..."
+@Article{Wandke_2023b,
+  author  = {Kevin Wandke and Y Z},
+  title   = {Physics-based finite element simulation of the dynamics of soft robots},
+  journal = {IEEE Access},
+  month   = jul,
+  year    = 2023,
+  pages   = {xx (8 pages)},
+  note    = {\url{https://doi.org/10.1109/ACCESS.2023.3291617}}
+}
+
+% Maybe MOOSE
+@Article{Shen_2023,
+  author  = {Yixi Shen and Peng Wen and An T. Ta and Simon R. Phillpot and Douglas E. Spearot},
+  title   = {{Migration velocities of intergranular He gas bubbles under thermal gradients in Fe by phase-field modeling}},
+  journal = {Journal of Nuclear Materials},
+  month   = jul,
+  year    = 2023,
+  pages   = {154606 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.jnucmat.2023.154606}}
+}
+
+% MOOSE/Zapdos
+@Article{DeChant_2023b,
+  author  = {Corey DeChant and Casey Icenhour and Shane Keniley and Grayson Gall and Alexander Lindsay and Davide Curreli and Steven Shannon},
+  title   = {{Verification and validation of the open-source plasma fluid code: Zapdos}},
+  journal = {Computer Physics Communications},
+  month   = jun,
+  year    = 2023,
+  pages   = {108837 (xx pages)},
+  note    = {\url{ttps://doi.org/10.1016/j.cpc.2023.108837}}
+}
+
 % Maybe MOOSE
 % The same author used MOOSE in a 2022 paper
 @Article{Bhuiyan_2023,
@@ -35,17 +69,6 @@ @Article{Sheldon_2023
   note    = {\url{https://doi.org/10.1111/bre.12792}}
 }
 
-% Maybe MOOSE
-@Article{Li_2023,
-  author  = {Yongchang Li and Zhihan Hu and Aaron French and Kenneth Cooper and Frank A. Garner and Lin Shao},
-  title   = {Effect of the free surface on near-surface void swelling in self-ion irradiated single crystal pure iron considering the carbon effect},
-  journal = {Journal of Nuclear Materials},
-  month   = jun,
-  year    = 2023,
-  pages   = {154594 (xx pages)},
-  note    = {\url{https://doi.org/10.1016/j.jnucmat.2023.154594}}
-}
-
 % MOOSE
 % "The phase field model is implemented in the MOOSE framework..."
 @Article{Xie_2023,
@@ -100,17 +123,6 @@ @Article{Sun_2023
   note    = {\url{https://doi.org/10.1111/jace.19202}}
 }
 
-% Maybe libMesh
-@Article{Tzirakis_2023,
-  author  = {Konstantinos Tzirakis and Christos Panagiotis Papanikas and Vangelis Sakkalis and Eleftheria Tzamali and Yannis Papaharilaou and Alfonso Caiazzo and Triantafyllos Stylianopoulos and Vasileios Vavourakis },
-  title   = {An adaptive semi-implicit finite element solver for brain cancer progression modeling},
-  journal = {International Journal for Numerical Methods in Biomedical Engineering},
-  month   = may,
-  year    = 2023,
-  pages   = {e3734 (xx pages)},
-  note    = {\url{https://doi.org/10.1002/cnm.3734}}
-}
-
 % MOOSE
 % "... front speed results generated by our SFDS are comparable to results generated by ... MOOSE with custom FP computation kernels..."
 @Article{Schaer_2023,
@@ -148,64 +160,3 @@ @Article{Novak_2023
   pages   = {xx (24 pages)},
   note    = {\url{https://doi.org/10.1080/00295639.2022.2158715}, Special Issue with papers from the 19th International Topical Meeting on Nuclear Reactor Thermal Hydraulics (NURETH-19), Brussels, Belgium,  Mar.\ 6--11, 2022}
 }
-
-% MOOSE/Griffin
-% "We implemented this functionality in Griffin..."
-% This is a PHYSOR 2022 conference paper that was published in NSE
-@Article{Calvin_2023,
-  author  = {Olin W. Calvin and Micah D. Gale and Sebastian Schunert},
-  title   = {{Evaluating quantities of interest other than nuclide densities in the Bateman equations}},
-  journal = {Nuclear Science and Engineering},
-  month   = feb,
-  year    = 2023,
-  pages   = {xx (17 pages)},
-  note    = {\url{https://doi.org/10.1080/00295639.2022.2161802}}
-}
-
-% MOOSE
-% This is a PHYSOR 2022 conference paper that was published in NSE
-@Article{Shemon_2023,
-  author  = {Emily Shemon and Yinbin Miao and Shikhar Kumar and Kun Mo and Yeon Sang Jung and Aaron Oaks and Scott Richards and Guillaume Giudicelli and Logan Harbour and Roy Stogner},
-  title   = {{MOOSE Reactor Module: An Open-Source Capability for Meshing Nuclear Reactor Geometries}},
-  journal = {Nuclear Science and Engineering},
-  month   = feb,
-  year    = 2023,
-  pages   = {xx (25 pages)},
-  note    = {\url{https://doi.org/10.1080/00295639.2022.2149231}}
-}
-
-% Maybe MOOSE
-% This is a PHYSOR 2022 conference paper that was published in NSE
-@Article{Kowal_2023,
-  author  = {Peter J. Kowal and Camden E. Blake and Kurt A. Dominesey and Robert A. Lefebvre and Forrest B. Brown and Wei Ji},
-  title   = {{Enhancing Monte Carlo workflows for nuclear reactor analysis with metamodel-driven modeling}},
-  journal = {Nuclear Science and Engineering},
-  month   = feb,
-  year    = 2023,
-  pages   = {xx (21 pages)},
-  note    = {\url{https://doi.org/10.1080/00295639.2022.2153617}}
-}
-
-% Maybe MOOSE
-% This is a PHYSOR 2022 conference paper that was published in NSE
-@Article{Bess_2023,
-  author  = {John D. Bess and Andrew S. Chipman and Chad L. Pope and Colby B. Jensen and Takayuki Ozawa and Shun Hirooka and Masato Kato},
-  title   = {{EBR-II MOX fuel characterization enabling ARES Phase I testing}},
-  journal = {Nuclear Science and Engineering},
-  month   = jan,
-  year    = 2023,
-  pages   = {xx (28 pages)},
-  note    = {\url{https://doi.org/10.1080/00295639.2022.2156240}}
-}
-
-% MOOSE
-% This is a PHYSOR 2022 conference paper that was published in NSE
-@Article{Giudicelli_2023,
-  author  = {Guillaume L. Giudicelli and Abdalla Abou-Jaoude and April J. Novak and Ahmed Abdelhameed and Paolo Balestra and Lise Charlot and Jun Fang and Bo Feng and Thomas Folk and Ramiro Freile and Thomas Freyman and Derek Gaston and Logan Harbour and Thanh Hua and Wen Jiang and Nicolas Martin and Yinbin Miao and Jason Miller and Isaac Naupa and Dan O'Grady and David Reger and Emily Shemon and Nicolas Stauff and Mauricio Tano and Stefano Terlizzi and Samuel Walker and Cody Permann},
-  title   = {{The Virtual Test Bed (VTB) repository: A library of reference reactor models using NEAMS tools}},
-  journal = {Nuclear Science and Engineering},
-  month   = jan,
-  year    = 2023,
-  pages   = {xx (17 pages)},
-  note    = {\url{https://doi.org/10.1080/00295639.2022.2142440}}
-}

doc/citations/twentyone.bib

@@ -1,3 +1,14 @@
+% MOOSE/Pronghorn
+% "Ultimately, a PBR bypass flow investigation is conducted using Pronghorn to explore the effects of bypass flow on PBR phenomena."
+@mastersthesis{MacDonald_thesis,
+  author = {Nolan MacDonald},
+  school = {Texas A\&M University},
+  title  = {Numerical modeling for characterization of pebble bed reactor bypass flows},
+  note   = {\url{https://hdl.handle.net/1969.1/195439}},
+  month  = aug,
+  year   = 2021
+}
+
 % MOOSE
 % "The dynamic equations above were solved by an open-source parallel finite element framework (MOOSE)"
 % https://cpb.iphy.ac.cn/EN/article/downloadArticleFile.do?attachType=PDF&id=123830

doc/citations/twentythree.bib

@@ -1,3 +1,72 @@
+% MOOSE/Griffin
+% "We implemented this functionality in Griffin..."
+% This is a PHYSOR 2022 conference paper that was published in NSE
+@Article{Calvin_2023,
+  author  = {Olin W. Calvin and Micah D. Gale and Sebastian Schunert},
+  title   = {{Evaluating quantities of interest other than nuclide densities in the Bateman equations}},
+  journal = {Nuclear Science and Engineering},
+  month   = jul,
+  year    = 2023,
+  volume  = 197,
+  number  = 8,
+  pages   = {2234--2250},
+  note    = {Special issue featuring papers from the 2022 International Conference on Physics of Reactors (PHYSOR 2022), \url{https://doi.org/10.1080/00295639.2022.2161802}}
+}
+
+% MOOSE
+% This is a PHYSOR 2022 conference paper that was published in NSE
+@Article{Shemon_2023,
+  author  = {Emily Shemon and Yinbin Miao and Shikhar Kumar and Kun Mo and Yeon Sang Jung and Aaron Oaks and Scott Richards and Guillaume Giudicelli and Logan Harbour and Roy Stogner},
+  title   = {{MOOSE Reactor Module: An open-source capability for meshing nuclear reactor geometries}},
+  journal = {Nuclear Science and Engineering},
+  month   = jul,
+  year    = 2023,
+  volume  = 197,
+  number  = 8,
+  pages   = {1656--1680},
+  note    = {Special issue featuring papers from the 2022 International Conference on Physics of Reactors (PHYSOR 2022), \url{https://doi.org/10.1080/00295639.2022.2149231}}
+}
+
+% MOOSE
+% This is a PHYSOR 2022 conference paper that was published in NSE
+@Article{Giudicelli_2023,
+  author  = {Guillaume L. Giudicelli and Abdalla Abou-Jaoude and April J. Novak and Ahmed Abdelhameed and Paolo Balestra and Lise Charlot and Jun Fang and Bo Feng and Thomas Folk and Ramiro Freile and Thomas Freyman and Derek Gaston and Logan Harbour and Thanh Hua and Wen Jiang and Nicolas Martin and Yinbin Miao and Jason Miller and Isaac Naupa and Dan O'Grady and David Reger and Emily Shemon and Nicolas Stauff and Mauricio Tano and Stefano Terlizzi and Samuel Walker and Cody Permann},
+  title   = {{The Virtual Test Bed (VTB) repository: A library of reference reactor models using NEAMS tools}},
+  journal = {Nuclear Science and Engineering},
+  month   = jul,
+  year    = 2023,
+  volume  = 197,
+  number  = 8,
+  pages   = {2217--2233},
+  note    = {Special issue featuring papers from the 2022 International Conference on Physics of Reactors (PHYSOR 2022), \url{https://doi.org/10.1080/00295639.2022.2142440}}
+}
+
+% MOOSE
+% "The bi-continuous NPG target nanostructure was produced using Phase Field Theory ... as implemented in the MOOSE code suite."
+% https://www.researchgate.net/publication/372073962_Atomistic_study_of_the_impact_response_of_bicontinuous_nanoporous_gold_as_a_protection_medium_Effect_of_porous-nonporous_interface_on_failure_evolution
+@Article{Saffarini_2023,
+  author  = {Mohammed H. Saffarini and Tommy Sewell and Yu-Chen Su and Zhen Chen},
+  title   = {{Atomistic study of the impact response of bicontinuous nanoporous gold as a protection medium: Effect of porous-nonporous interface on failure evolution}},
+  journal = {Computational Materials Science},
+  month   = sep,
+  year    = 2023,
+  volume  = 228,
+  pages   = {112363 (xx pages)},
+  note    = {\url{https://doi.org/10.1016/j.commatsci.2023.112363}}
+}
+
+% MOOSE
+% "All models were simulated with our house-developed code based on the open-source Finite Element framework MOOSE..."
+% ResearchGate Preprint: https://www.researchgate.net/publication/372074598_Mechanical_investigations_of_composite_cathode_degradation_in_all-solid-state-batteries
+@Misc{Farzanian_2023,
+  author       = {Shafee Farzanian and Imtiaz Shozib and Nikhil Sivadas and Valentina Lacivita and Yan Wang and Qingsong Howard Tu},
+  title        = {Mechanical investigations of composite cathode degradation in all-solid-state-batteries},
+  month        = jul,
+  year         = 2023,
+  howpublished = {ArXiv e-print},
+  note         = {\url{https://arxiv.org/abs/2307.00145}}
+}
+
 % MOOSE
 % "The training data is obtained from the finite element simulations on the microscopic level using the open-source framework ... (MOOSE)"
 @Article{Asheri_2023,
@@ -472,7 +541,7 @@ @Article{Recuero_2023
 % MOOSE
 % "To demonstrate the flexibility of MMS in verifying these highly coupled systems, ... (MOOSE) framework was utilized..."
 @Article{DeChant_2023,
-  author  = {Corey DeChant and Casey Icenhour and Shane Keniley and Alexander Lindsay and Grayson Scott Gall and Kimberly Clein Hizon and Davide Curreli and Steven Shannon },
+  author  = {Corey DeChant and Casey Icenhour and Shane Keniley and Alexander Lindsay and Grayson Scott Gall and Kimberly Clein Hizon and Davide Curreli and Steven Shannon},
   title   = {Verification methods for drift-diffusion reaction models for plasma simulations},
   journal = {Plasma Sources Science and Technology},
   month   = apr,

doc/statistics/github_traffic_plotclones.csv

@@ -3250,4 +3250,13 @@
 2023-Jun-28,116,50
 2023-Jun-29,121,53
 2023-Jun-30,82,39
-2023-Jul-01,66,19
+2023-Jul-01,84,25
+2023-Jul-02,57,19
+2023-Jul-03,96,48
+2023-Jul-04,65,29
+2023-Jul-05,119,43
+2023-Jul-06,121,45
+2023-Jul-07,118,48
+2023-Jul-08,46,21
+2023-Jul-09,38,10
+2023-Jul-10,50,19

doc/statistics/github_traffic_plotviews.csv

@@ -3419,4 +3419,13 @@
 2023-Jun-28,85,27
 2023-Jun-29,78,28
 2023-Jun-30,155,27
-2023-Jul-01,34,6
+2023-Jul-01,132,14
+2023-Jul-02,51,13
+2023-Jul-03,182,27
+2023-Jul-04,120,27
+2023-Jul-05,185,28
+2023-Jul-06,144,21
+2023-Jul-07,107,20
+2023-Jul-08,182,9
+2023-Jul-09,56,9
+2023-Jul-10,118,14