Merge pull request #22 from linkml/copilot/sub-pr-20-again

Fix BiosaftyLevelEnum misspelling and remove unused imports from generated enums

Author: cmungall

cache/chebi/terms.csv

@@ -223,3 +223,4 @@ CHEBI:37739,glycerophospholipid,2025-10-19T08:26:29.438101
 CHEBI:26739,sphingolipid,2025-10-19T08:26:29.438967
 CHEBI:35341,steroid,2025-10-19T08:26:29.439762
 CHEBI:24913,isoprenoid,2025-10-19T08:26:29.440626
+CHEBI:46662,,2025-11-05T18:04:52.255672

cache/envo/terms.csv

@@ -26,3 +26,19 @@ ENVO:00001997,acid mine drainage,2025-10-19T07:20:48.916991
 ENVO:01001069,metallic material,2025-10-19T07:20:50.020025
 ENVO:03501307,ceramic,2025-10-19T07:20:50.020807
 ENVO:06105005,thermoset polymer,2025-10-19T07:20:50.024438
+ENVO:01001125,,2025-11-05T18:04:52.255368
+ENVO:00001995,,2025-11-05T18:04:52.255914
+ENVO:00002007,,2025-11-05T18:04:52.256060
+ENVO:00001998,,2025-11-05T18:04:52.256187
+ENVO:00000169,,2025-11-05T18:04:52.263356
+ENVO:00000067,,2025-11-05T18:04:52.263506
+ENVO:00000101,,2025-11-05T18:04:52.263660
+ENVO:00000045,,2025-11-05T18:04:52.263792
+ENVO:00000215,,2025-11-05T18:04:52.263919
+ENVO:00000020,,2025-11-05T18:04:52.264047
+ENVO:00000081,,2025-11-05T18:04:52.264181
+ENVO:00000080,,2025-11-05T18:04:52.264311
+ENVO:01001899,,2025-11-05T18:04:52.264442
+ENVO:00000264,,2025-11-05T18:04:52.264570
+ENVO:00000267,,2025-11-05T18:04:52.264722
+ENVO:00000247,,2025-11-05T18:04:52.264851

docs/schema/valuesets.yaml

@@ -3720,9 +3720,9 @@ enums:
       CANCELLED:
         text: CANCELLED
         description: Processing cancelled by user
-  BiosaftyLevelEnum:
-    name: BiosaftyLevelEnum
-    definition_uri: https://w3id.org/valuesets/BiosaftyLevelEnum
+  BiosafetyLevelEnum:
+    name: BiosafetyLevelEnum
+    definition_uri: https://w3id.org/valuesets/BiosafetyLevelEnum
     description: Biosafety levels (BSL) defining containment requirements for biological
       agents
     from_schema: https://w3id.org/linkml/valuesets/bio/biosafety
@@ -48264,7 +48264,7 @@ slots:
       on potential risk
     from_schema: https://w3id.org/linkml/valuesets/bio/biosafety
     slot_uri: valuesets:biosafety_level
-    range: BiosaftyLevelEnum
+    range: BiosafetyLevelEnum
   insdc_missing_value:
     name: insdc_missing_value
     definition_uri: https://w3id.org/valuesets/insdc_missing_value
@@ -51069,7 +51069,7 @@ classes:
     class_uri: valuesets:Fake
 metamodel_version: 1.7.0
 source_file: valuesets.yaml
-source_file_date: '2025-10-30T12:09:22'
+source_file_date: '2025-11-05T17:59:31'
 source_file_size: 2816
-generation_date: '2025-11-03T17:34:51'
+generation_date: '2025-11-05T18:05:58'
 

project/jsonschema/valuesets.schema.json

@@ -614,15 +614,15 @@
             "title": "BioreactorTypeEnum",
             "type": "string"
         },
-        "BiosaftyLevelEnum": {
+        "BiosafetyLevelEnum": {
             "description": "Biosafety levels (BSL) defining containment requirements for biological agents",
             "enum": [
                 "BSL1",
                 "BSL2",
                 "BSL3",
                 "BSL4"
             ],
-            "title": "BiosaftyLevelEnum",
+            "title": "BiosafetyLevelEnum",
             "type": "string"
         },
         "BioticInteractionType": {

src/valuesets/datamodel/valuesets.py

@@ -1418,7 +1418,7 @@ class ProcessingStatus(RichEnum):
     "CANCELLED": {'description': 'Processing cancelled by user'},
 }
 
-class BiosaftyLevelEnum(RichEnum):
+class BiosafetyLevelEnum(RichEnum):
     """
     Biosafety levels (BSL) defining containment requirements for biological agents
     """
@@ -1429,7 +1429,7 @@ class BiosaftyLevelEnum(RichEnum):
     BSL4 = "BSL4"
 
 # Set metadata after class creation to avoid it becoming an enum member
-BiosaftyLevelEnum._metadata = {
+BiosafetyLevelEnum._metadata = {
     "BSL1": {'description': 'Suitable for well-characterized agents not known to consistently cause disease in healthy adults', 'meaning': 'SNOMED:409600007'},
     "BSL2": {'description': 'Suitable for agents that pose moderate hazards to personnel and the environment', 'meaning': 'SNOMED:409603009'},
     "BSL3": {'description': 'Suitable for indigenous or exotic agents that may cause serious or potentially lethal disease through inhalation', 'meaning': 'SNOMED:409604003'},