loculus/.github/workflows/cli-tests.yml at main · loculus-project/loculus · GitHub

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name: cli-tests
on:
  pull_request:
    paths:
      - "cli/**"
      - ".github/workflows/cli-tests.yml"
  push:
    branches:
      - main
  workflow_dispatch:
concurrency:
  group: ci-${{ github.ref == 'refs/heads/main' && github.run_id || github.ref }}-cli-tests
  cancel-in-progress: true
jobs:
  unitTests:
    name: Unit Tests
    runs-on: ubuntu-latest
    timeout-minutes: 15
    steps:
      - uses: actions/checkout@v7
      - name: Set up Python
        uses: actions/setup-python@v6
        with:
          python-version: "3.10"
      - name: Install uv
        uses: astral-sh/setup-uv@v7
      - name: Install dependencies and package
        run: uv sync --all-extras
        working-directory: cli
      # - name: Run tests
      #   run: uv run pytest
      #   working-directory: cli
  check-format:
    name: Check formatting
    runs-on: ubuntu-latest
    timeout-minutes: 5
    steps:
      - uses: actions/checkout@v7
      - name: Set up Python
        uses: actions/setup-python@v6
        with:
          python-version: "3.10"
      - name: Install uv
        uses: astral-sh/setup-uv@v7
      - name: Install dependencies and package
        run: uv sync --all-extras
        working-directory: cli
      - name: Check black formatting
        run: uv run black --check .
        working-directory: cli
      - name: Check ruff linting
        run: uv run ruff check .
        working-directory: cli
  check-types:
    name: Check types
    runs-on: ubuntu-latest
    timeout-minutes: 5
    steps:
      - uses: actions/checkout@v7
      - name: Set up Python
        uses: actions/setup-python@v6
        with:
          python-version: "3.10"
      - name: Install uv
        uses: astral-sh/setup-uv@v7
      - name: Install dependencies and package
        run: uv sync --all-extras
        working-directory: cli
      - name: Check types with mypy
        run: uv run mypy .
        working-directory: cli