feat(config): switch to github pages (#6880)

We were getting rate limited, see thread in
https://loculus.slack.com/archives/C05G172HL6L/p1783581167378499

### Screenshot

### PR Checklist
- [ ] All necessary documentation has been adapted.
- [ ] The implemented feature is covered by appropriate, automated
tests.
- [ ] Any manual testing that has been done is documented (i.e. what
exactly was tested?)

🚀 Preview: https://use-github-pages.loculus.org

Author: anna-parker

backend/docs/organismWithSuborganisms.md

@@ -74,7 +74,7 @@ defaultOrganisms:
           <<: *preprocessingConfigFile
           # use a minimizer to figure out which suborganism a submitted sequence belongs to
           segment_classification_method: "minimizer"
-          minimizer_url: "https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/evs_minimizer-index.json"
+          minimizer_url: "https://alejandra-gonzalezsanchez.github.io/loculus-evs/evs_minimizer-index.json"
           segments:
             - name: main
               references:

kubernetes/loculus/values.yaml

@@ -2449,7 +2449,7 @@ defaultOrganisms:
           segment_classification_method: "minimizer"
           # TODO(https://github.com/loculus-project/loculus/issues/5673): switch creation on when multi-path is supported
           create_embl_file: false
-          minimizer_url: "https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/evs_minimizer-index.json"
+          minimizer_url: "https://alejandra-gonzalezsanchez.github.io/loculus-evs/evs_minimizer-index.json"
           segments:
             - name: main
               references:
@@ -2505,109 +2505,109 @@ defaultOrganisms:
       - name: main
         references:
           - name: CV-A16
-            sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva16/reference-cva16.fasta]]"
+            sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva16/reference-cva16.fasta]]"
             insdcAccessionFull: U05876.1
             genes:
               - name: VP4
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva16/VP4-cva16.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva16/VP4-cva16.fasta]]"
               - name: VP2
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva16/VP2-cva16.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva16/VP2-cva16.fasta]]"
               - name: VP3
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva16/VP3-cva16.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva16/VP3-cva16.fasta]]"
               - name: VP1
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva16/VP1-cva16.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva16/VP1-cva16.fasta]]"
               - name: 2A
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva16/2A-cva16.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva16/2A-cva16.fasta]]"
               - name: 2B
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva16/2B-cva16.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva16/2B-cva16.fasta]]"
               - name: 2C
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva16/2C-cva16.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva16/2C-cva16.fasta]]"
               - name: 3A
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva16/3A-cva16.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva16/3A-cva16.fasta]]"
               - name: 3B
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva16/3B-cva16.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva16/3B-cva16.fasta]]"
               - name: 3C
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva16/3C-cva16.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva16/3C-cva16.fasta]]"
               - name: 3D
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva16/3D-cva16.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva16/3D-cva16.fasta]]"
           - name: CV-A10
-            sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva10/reference-cva10.fasta]]"
+            sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva10/reference-cva10.fasta]]"
             insdcAccessionFull: AY421767.1
             genes:
               - name: VP4
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva10/VP4-cva10.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva10/VP4-cva10.fasta]]"
               - name: VP2
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva10/VP2-cva10.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva10/VP2-cva10.fasta]]"
               - name: VP3
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva10/VP3-cva10.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva10/VP3-cva10.fasta]]"
               - name: VP1
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva10/VP1-cva10.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva10/VP1-cva10.fasta]]"
               - name: 2A
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva10/2A-cva10.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva10/2A-cva10.fasta]]"
               - name: 2B
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva10/2B-cva10.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva10/2B-cva10.fasta]]"
               - name: 2C
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva10/2C-cva10.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva10/2C-cva10.fasta]]"
               - name: 3A
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva10/3A-cva10.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva10/3A-cva10.fasta]]"
               - name: 3B
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva10/3B-cva10.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva10/3B-cva10.fasta]]"
               - name: 3C
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva10/3C-cva10.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva10/3C-cva10.fasta]]"
               - name: 3D
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/cva10/3D-cva10.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/cva10/3D-cva10.fasta]]"
           - name: EV-A71
-            sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/eva71/reference-eva71.fasta]]"
+            sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/eva71/reference-eva71.fasta]]"
             insdcAccessionFull: U22521.1
             genes:
               - name: VP4
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/eva71/VP4-eva71.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/eva71/VP4-eva71.fasta]]"
               - name: VP2
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/eva71/VP2-eva71.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/eva71/VP2-eva71.fasta]]"
               - name: VP3
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/eva71/VP3-eva71.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/eva71/VP3-eva71.fasta]]"
               - name: VP1
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/eva71/VP1-eva71.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/eva71/VP1-eva71.fasta]]"
               - name: 2A
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/eva71/2A-eva71.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/eva71/2A-eva71.fasta]]"
               - name: 2B
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/eva71/2B-eva71.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/eva71/2B-eva71.fasta]]"
               - name: 2C
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/eva71/2C-eva71.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/eva71/2C-eva71.fasta]]"
               - name: 3A
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/eva71/3A-eva71.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/eva71/3A-eva71.fasta]]"
               - name: 3B
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/eva71/3B-eva71.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/eva71/3B-eva71.fasta]]"
               - name: 3C
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/eva71/3C-eva71.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/eva71/3C-eva71.fasta]]"
               - name: 3D
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/eva71/3D-eva71.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/eva71/3D-eva71.fasta]]"
           - name: EV-D68
-            sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/evd68/reference-evd68.fasta]]"
+            sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/evd68/reference-evd68.fasta]]"
             insdcAccessionFull: AY426531.1
             genes:
               - name: VP4
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/evd68/VP4-evd68.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/evd68/VP4-evd68.fasta]]"
               - name: VP2
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/evd68/VP2-evd68.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/evd68/VP2-evd68.fasta]]"
               - name: VP3
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/evd68/VP3-evd68.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/evd68/VP3-evd68.fasta]]"
               - name: VP1
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/evd68/VP1-evd68.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/evd68/VP1-evd68.fasta]]"
               - name: 2A
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/evd68/2A-evd68.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/evd68/2A-evd68.fasta]]"
               - name: 2B
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/evd68/2B-evd68.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/evd68/2B-evd68.fasta]]"
               - name: 2C
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/evd68/2C-evd68.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/evd68/2C-evd68.fasta]]"
               - name: 3A
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/evd68/3A-evd68.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/evd68/3A-evd68.fasta]]"
               - name: 3B
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/evd68/3B-evd68.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/evd68/3B-evd68.fasta]]"
               - name: 3C
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/evd68/3C-evd68.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/evd68/3C-evd68.fasta]]"
               - name: 3D
-                sequence: "[[URL:https://raw.githubusercontent.com/alejandra-gonzalezsanchez/loculus-evs/master/enterovirus/evd68/3D-evd68.fasta]]"
+                sequence: "[[URL:https://alejandra-gonzalezsanchez.github.io/loculus-evs/enterovirus/evd68/3D-evd68.fasta]]"
 auth:
   verifyEmail: false
   resetPasswordAllowed: true