chore(ci): log basic details of downloaded ncbi datasets (#5513)

- Doesn't harm to have md5, file size, number of sequences/avg length
etc:
- Also schedule the prio 2 at 1hr offset from the regular 2hr prio 1 for
more spread out load for ncbi.

<img width="730" height="475" alt="image"
src="https://github.com/user-attachments/assets/93620e4d-371d-4b9f-9130-b7b0b9a0fe84"
/>


Tested manually with one taxon id, see screenshot

Author: corneliusroemer

.github/workflows/datasets-mirror-priority-2.yml

@@ -2,7 +2,7 @@ name: Mirror NCBI Datasets (Priority 2 - Daily)
 on:
   workflow_dispatch:  # Allows manual triggering to re-run all priority-2 taxa
   schedule:
-    - cron: '12 2 * * *' # Runs daily at 02:12 UTC
+    - cron: '12 3 * * *' # Runs daily at 03:12 UTC
 jobs:
   mirror:
     strategy:

.github/workflows/datasets-mirror.yml

@@ -24,13 +24,16 @@ jobs:
       - uses: mamba-org/setup-micromamba@v2
         with:
           environment-name: datasets
-          create-args: ncbi-datasets-cli s3cmd
-      - name: Download NCBI Dataset
+          create-args: -c conda-forge -c bioconda ncbi-datasets-cli s3cmd seqkit
+      - name: Download NCBI Dataset and create tzst archive
         shell: bash -l {0}
         run: |
           datasets download virus genome taxon ${{ inputs.taxon_id }} --no-progressbar --filename ${{ inputs.taxon_id }}.zip
           unzip -o ${{ inputs.taxon_id }}.zip
           tar -I 'zstd -T0 -18' -cvf ${{ inputs.taxon_id }}.tar.zst ncbi_dataset
+          cat md5sum.txt
+          ls -lh ${{ inputs.taxon_id }}.* ncbi_dataset/data/*
+          seqkit stats ncbi_dataset/data/genomic.fna
       - name: Create S3cmd config
         run: |
           cat <<EOF > ~/.s3cfg