test on preview

Author: anna-parker

kubernetes/loculus/values.yaml

@@ -1379,21 +1379,6 @@ defaultOrganismConfig: &defaultOrganismConfig
           label: Length
         preprocessing:
           inputs: {input: nextclade.coverage}
-      - name: variant
-        isSequenceFilter: true
-        perSegment: true
-        header: "Alignment and QC metrics"
-        displayName: "Variant"
-        type: boolean
-        noInput: true
-        autocomplete: true
-        initiallyVisible: false
-        includeInDownloadsByDefault: false
-        preprocessing:
-          function: is_above_threshold
-          args:
-            threshold: 50
-          inputs: {input: "nextclade.privateNucMutations.totalPrivateSubstitutions"}
     website: &website
       tableColumns:
         - sampleCollectionDate
@@ -1548,6 +1533,21 @@ defaultOrganisms:
           includeInDownloadsByDefault: false
           preprocessing:
             inputs: {input: "nextclade.cladeFounderInfo.aaMutations.*.privateSubstitutions"}
+        - name: variant
+          isSequenceFilter: true
+          perSegment: true
+          header: "Alignment and QC metrics"
+          displayName: "Variant"
+          type: boolean
+          noInput: true
+          autocomplete: true
+          initiallyVisible: false
+          includeInDownloadsByDefault: false
+          preprocessing:
+            function: is_variant
+            args:
+              mu: 0.002
+            inputs: {numMutations: "nextclade.privateNucMutations.totalPrivateSubstitutions", length: processed.length}
       website:
         <<: *website
         tableColumns: