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Visualizing MetaCompass assembly results

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Victoria Cepeda edited this page Sep 5, 2018 · 3 revisions

bam files in pilon_output can be visualize in IGV. pileup of reads against reads and how the consensus was called.

for example...

Additionally, assembly graphs can be visualize in metagenome scope

SRS044742_2018/metacompass_logs: SRS044742.0.bowtie2map.log SRS044742.0.kmermask.log SRS044742.0.megahit.log SRS044742.0.pilon.map.log SRS044742.0.reference_recruitement.log

SRS044742_2018/metacompass_output: metacompass_assembly_stats.tsv metacompass.final.ctg.fa metacompass_summary.tsv

Add header from sam.all to sam file

  1. Home
  2. Running MetaCompass
  3. MetaCompass STEPS
  4. Examples of real assembly with MetaCompass
  5. Analyzing MetaCompass results
  6. Visualizing MetaCompass assembly results

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