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Visualizing MetaCompass assembly results

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Victoria Cepeda edited this page Sep 5, 2018 · 3 revisions

Alignment Visualization

Intermediate files mapping files (bam files) can be visualized in IGV. "pilon_output" pileup of reads against reads and how the consensus was called.

Assembly Graph Visualization

Additionally, assembly graphs can be visualized in metagenome scope

  1. Home
  2. Running MetaCompass
  3. MetaCompass STEPS
  4. Examples of real assembly with MetaCompass
  5. Analyzing MetaCompass results
  6. Visualizing MetaCompass assembly results

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