Updated manuscript notebook to give info about version. Got patterning working properly using ggpattern 0.2.0

Author: Mark Payne

manuscript/Fish_decadal_prediction_Figures.Rmd

@@ -43,6 +43,7 @@ knitr::opts_chunk$set(
   warning = FALSE,
   include = TRUE,
   results = "markup",
+  dev=c("png","pdf"),
   #dev="CairoSVG",
   # fig.width = 10,         #Old 4:3
   # fig.height=14/25*10,
@@ -73,6 +74,18 @@ library(ggpattern)
 theme_set(theme_bw())
 theme_replace(strip.background = element_blank())
 
+#SF Bug
+#Seems to be a bug here that I am encountering in sf 1.0.7. See this issue
+# https://github.com/r-spatial/sf/issues/1856
+#Error message is:
+      # Error in st_cast.POINT(x[[1]], to, ...) : 
+      #   cannot create MULTILINESTRING from POINT
+      # In addition: Warning message:
+      # In st_cast.GEOMETRYCOLLECTION(X[[i]], ...) :
+      #   only first part of geometrycollection is retained
+#One user mentioned that disabling s2 solved it for them. Also worked for me.
+sf_use_s2(FALSE) 
+
 ```
 
 by Mark R Payne  <br>
@@ -1248,7 +1261,7 @@ for(plt.cfg in sp.plt.cfg) {
                  labels=plt.cfg$fill.lbls,
                  limits=plt.cfg$fill.lims,
                  show.limits=TRUE)+
-    # #Significance
+    #Significance
     geom_sf_pattern(data=met.sig,
                     aes(pattern_fill="Not significant\n(p>0.05)"),
                     fill=NA,
@@ -1271,6 +1284,7 @@ for(plt.cfg in sp.plt.cfg) {
                                  title=plt.cfg$fill.ttl,
                                  ticks=TRUE,
                                  order=1,
+                                 ticks.colour="black",
                                  frame.colour="black"),
            pattern_fill=guide_legend(title=element_blank(),
                                      order=2),
@@ -1464,6 +1478,12 @@ wrap_plots(this.p.smooth,this.fixed.lead,ncol=2) +
 
 ```
 
+## Session details
+
+```{r}
+sessionInfo()
+```
+
 
 ***
 *This work by Mark R Payne is licensed under a  Creative Commons

renv.lock

@@ -581,16 +581,10 @@
     },
     "ggpattern": {
       "Package": "ggpattern",
-      "Version": "0.3.2-11",
-      "Source": "GitHub",
-      "Remotes": "trevorld/gridpattern",
-      "RemoteType": "github",
-      "RemoteHost": "api.github.com",
-      "RemoteRepo": "ggpattern",
-      "RemoteUsername": "coolbutuseless",
-      "RemoteRef": "HEAD",
-      "RemoteSha": "2f72148594cf2039cfda16dbd6927a2d7e3aca91",
-      "Hash": "86ee92bd8d9f196f505c0b4097888781",
+      "Version": "0.2.0",
+      "Source": "Repository",
+      "Repository": "CRAN",
+      "Hash": "38a9ea964d336bb3d43403fb085fc8c5",
       "Requirements": [
         "ggplot2",
         "glue",