Removed unused settings

martinpacesa · web-flow · commit b8642f3ff27e · 2025-04-06T08:48:51.000+02:00
diff --git a/settings_advanced/betasheet_4stage_multimer.json b/settings_advanced/betasheet_4stage_multimer.json
@@ -34,7 +34,6 @@
     "weights_rg": 0.3,
     "use_termini_distance_loss": false,
     "weights_termini_loss": 0.1,
-    "cyclize_peptide": false,
     "enable_mpnn": true,
     "mpnn_fix_interface": true,
     "num_seqs": 20,
diff --git a/settings_advanced/betasheet_4stage_multimer_flexible.json b/settings_advanced/betasheet_4stage_multimer_flexible.json
@@ -34,7 +34,6 @@
     "weights_rg": 0.3,
     "use_termini_distance_loss": false,
     "weights_termini_loss": 0.1,
-    "cyclize_peptide": false,
     "enable_mpnn": true,
     "mpnn_fix_interface": true,
     "num_seqs": 20,
diff --git a/settings_advanced/betasheet_4stage_multimer_flexible_hardtarget.json b/settings_advanced/betasheet_4stage_multimer_flexible_hardtarget.json
@@ -34,7 +34,6 @@
     "weights_rg": 0.3,
     "use_termini_distance_loss": false,
     "weights_termini_loss": 0.1,
-    "cyclize_peptide": false,
     "enable_mpnn": true,
     "mpnn_fix_interface": true,
     "num_seqs": 20,
diff --git a/settings_advanced/betasheet_4stage_multimer_hardtarget.json b/settings_advanced/betasheet_4stage_multimer_hardtarget.json
@@ -34,7 +34,6 @@
     "weights_rg": 0.3,
     "use_termini_distance_loss": false,
     "weights_termini_loss": 0.1,
-    "cyclize_peptide": false,
     "enable_mpnn": true,
     "mpnn_fix_interface": true,
     "num_seqs": 20,
diff --git a/settings_advanced/betasheet_4stage_multimer_mpnn.json b/settings_advanced/betasheet_4stage_multimer_mpnn.json
@@ -34,7 +34,6 @@
     "weights_rg": 0.3,
     "use_termini_distance_loss": false,
     "weights_termini_loss": 0.1,
-    "cyclize_peptide": false,
     "enable_mpnn": true,
     "mpnn_fix_interface": false,
     "num_seqs": 20,
diff --git a/settings_advanced/betasheet_4stage_multimer_mpnn_flexible.json b/settings_advanced/betasheet_4stage_multimer_mpnn_flexible.json
@@ -34,7 +34,6 @@
     "weights_rg": 0.3,
     "use_termini_distance_loss": false,
     "weights_termini_loss": 0.1,
-    "cyclize_peptide": false,
     "enable_mpnn": true,
     "mpnn_fix_interface": false,
     "num_seqs": 20,
diff --git a/settings_advanced/betasheet_4stage_multimer_mpnn_flexible_hardtarget.json b/settings_advanced/betasheet_4stage_multimer_mpnn_flexible_hardtarget.json
@@ -34,7 +34,6 @@
     "weights_rg": 0.3,
     "use_termini_distance_loss": false,
     "weights_termini_loss": 0.1,
-    "cyclize_peptide": false,
     "enable_mpnn": true,
     "mpnn_fix_interface": false,
     "num_seqs": 20,
diff --git a/settings_advanced/betasheet_4stage_multimer_mpnn_hardtarget.json b/settings_advanced/betasheet_4stage_multimer_mpnn_hardtarget.json
@@ -34,7 +34,6 @@
     "weights_rg": 0.3,
     "use_termini_distance_loss": false,
     "weights_termini_loss": 0.1,
-    "cyclize_peptide": false,
     "enable_mpnn": true,
     "mpnn_fix_interface": false,
     "num_seqs": 20,
diff --git a/settings_advanced/default_4stage_multimer.json b/settings_advanced/default_4stage_multimer.json
@@ -34,7 +34,6 @@
     "weights_rg": 0.3,
     "use_termini_distance_loss": false,
     "weights_termini_loss": 0.1,
-    "cyclize_peptide": false,
     "enable_mpnn": true,
     "mpnn_fix_interface": true,
     "num_seqs": 20,
diff --git a/settings_advanced/default_4stage_multimer_flexible.json b/settings_advanced/default_4stage_multimer_flexible.json
@@ -34,7 +34,6 @@
     "weights_rg": 0.3,
     "use_termini_distance_loss": false,
     "weights_termini_loss": 0.1,
-    "cyclize_peptide": false,
     "enable_mpnn": true,
     "mpnn_fix_interface": true,
     "num_seqs": 20,
diff --git a/settings_advanced/default_4stage_multimer_flexible_hardtarget.json b/settings_advanced/default_4stage_multimer_flexible_hardtarget.json
@@ -34,7 +34,6 @@
     "weights_rg": 0.3,
     "use_termini_distance_loss": false,
     "weights_termini_loss": 0.1,
-    "cyclize_peptide": false,
     "enable_mpnn": true,
     "mpnn_fix_interface": true,
     "num_seqs": 20,
diff --git a/settings_advanced/default_4stage_multimer_hardtarget.json b/settings_advanced/default_4stage_multimer_hardtarget.json
@@ -34,7 +34,6 @@
     "weights_rg": 0.3,
     "use_termini_distance_loss": false,
     "weights_termini_loss": 0.1,
-    "cyclize_peptide": false,
     "enable_mpnn": true,
     "mpnn_fix_interface": true,
     "num_seqs": 20,
diff --git a/settings_advanced/default_4stage_multimer_mpnn.json b/settings_advanced/default_4stage_multimer_mpnn.json
@@ -34,7 +34,6 @@
     "weights_rg": 0.3,
     "use_termini_distance_loss": false,
     "weights_termini_loss": 0.1,
-    "cyclize_peptide": false,
     "enable_mpnn": true,
     "mpnn_fix_interface": false,
     "num_seqs": 20,
diff --git a/settings_advanced/default_4stage_multimer_mpnn_flexible.json b/settings_advanced/default_4stage_multimer_mpnn_flexible.json
@@ -34,7 +34,6 @@
     "weights_rg": 0.3,
     "use_termini_distance_loss": false,
     "weights_termini_loss": 0.1,
-    "cyclize_peptide": false,
     "enable_mpnn": true,
     "mpnn_fix_interface": false,
     "num_seqs": 20,
diff --git a/settings_advanced/default_4stage_multimer_mpnn_flexible_hardtarget.json b/settings_advanced/default_4stage_multimer_mpnn_flexible_hardtarget.json
@@ -34,7 +34,6 @@
     "weights_rg": 0.3,
     "use_termini_distance_loss": false,
     "weights_termini_loss": 0.1,
-    "cyclize_peptide": false,
     "enable_mpnn": true,
     "mpnn_fix_interface": false,
     "num_seqs": 20,
diff --git a/settings_advanced/default_4stage_multimer_mpnn_hardtarget.json b/settings_advanced/default_4stage_multimer_mpnn_hardtarget.json
@@ -34,7 +34,6 @@
     "weights_rg": 0.3,
     "use_termini_distance_loss": false,
     "weights_termini_loss": 0.1,
-    "cyclize_peptide": false,
     "enable_mpnn": true,
     "mpnn_fix_interface": false,
     "num_seqs": 20,
diff --git a/settings_advanced/peptide_3stage_multimer.json b/settings_advanced/peptide_3stage_multimer.json
@@ -34,7 +34,6 @@
     "weights_rg": 0.3,
     "use_termini_distance_loss": false,
     "weights_termini_loss": 0.1,
-    "cyclize_peptide": false,
     "enable_mpnn": true,
     "mpnn_fix_interface": true,
     "num_seqs": 10,
diff --git a/settings_advanced/peptide_3stage_multimer_flexible.json b/settings_advanced/peptide_3stage_multimer_flexible.json
@@ -34,7 +34,6 @@
     "weights_rg": 0.3,
     "use_termini_distance_loss": false,
     "weights_termini_loss": 0.1,
-    "cyclize_peptide": false,
     "enable_mpnn": true,
     "mpnn_fix_interface": true,
     "num_seqs": 10,
diff --git a/settings_advanced/peptide_3stage_multimer_mpnn.json b/settings_advanced/peptide_3stage_multimer_mpnn.json
@@ -34,7 +34,6 @@
     "weights_rg": 0.3,
     "use_termini_distance_loss": false,
     "weights_termini_loss": 0.1,
-    "cyclize_peptide": false,
     "enable_mpnn": true,
     "mpnn_fix_interface": false,
     "num_seqs": 50,
diff --git a/settings_advanced/peptide_3stage_multimer_mpnn_flexible.json b/settings_advanced/peptide_3stage_multimer_mpnn_flexible.json
@@ -34,7 +34,6 @@
     "weights_rg": 0.3,
     "use_termini_distance_loss": false,
     "weights_termini_loss": 0.1,
-    "cyclize_peptide": false,
     "enable_mpnn": true,
     "mpnn_fix_interface": false,
     "num_seqs": 50,
