Automated dependency upgrades (#985)

* Update ubuntu-latest dependencies for mp-api

* Update ubuntu-latest dependencies for mp-api

---------

Co-authored-by: github-actions <github-actions@github.com>

Author: munrojm

requirements/requirements-ubuntu-latest_py3.11.txt

@@ -8,66 +8,68 @@ aioitertools==0.12.0
     # via maggma
 annotated-types==0.7.0
     # via pydantic
-attrs==24.2.0
+attrs==25.3.0
     # via
     #   jsonlines
     #   jsonschema
     #   referencing
-bcrypt==4.2.1
+bcrypt==4.3.0
     # via paramiko
-boto3==1.35.78
+bibtexparser==1.4.3
+    # via pymatgen
+boto3==1.38.31
     # via maggma
-botocore==1.35.78
+botocore==1.38.31
     # via
     #   boto3
     #   s3transfer
-certifi==2024.8.30
+certifi==2025.4.26
     # via requests
 cffi==1.17.1
     # via
     #   cryptography
     #   pynacl
-charset-normalizer==3.4.0
+charset-normalizer==3.4.2
     # via requests
-contourpy==1.3.1
+contourpy==1.3.2
     # via matplotlib
-cryptography==44.0.0
+cryptography==45.0.3
     # via paramiko
 cycler==0.12.1
     # via matplotlib
 dnspython==2.7.0
     # via
     #   maggma
     #   pymongo
-emmet-core==0.84.3rc6
+emmet-core==0.84.7rc3
     # via mp-api (pyproject.toml)
-fonttools==4.55.3
+fonttools==4.58.1
     # via matplotlib
 idna==3.10
     # via requests
 jmespath==1.0.1
     # via
     #   boto3
     #   botocore
-joblib==1.4.2
+joblib==1.5.1
     # via pymatgen
 jsonlines==4.0.0
     # via maggma
-jsonschema==4.23.0
+jsonschema==4.24.0
     # via maggma
-jsonschema-specifications==2024.10.1
+jsonschema-specifications==2025.4.1
     # via jsonschema
-kiwisolver==1.4.7
+kiwisolver==1.4.8
     # via matplotlib
 latexcodec==3.0.0
     # via pybtex
-maggma==0.70.0
+maggma==0.71.5
     # via mp-api (pyproject.toml)
-matplotlib==3.9.3
+matplotlib==3.10.3
     # via pymatgen
 mongomock==4.3.0
     # via maggma
-monty==2024.12.10
+monty==2025.3.3
     # via
     #   emmet-core
     #   maggma
@@ -79,144 +81,152 @@ msgpack==1.1.0
     # via
     #   maggma
     #   mp-api (pyproject.toml)
-networkx==3.4.2
+narwhals==1.41.0
+    # via plotly
+networkx==3.5
     # via pymatgen
-numpy==1.26.4
+numpy==2.2.6
     # via
     #   contourpy
-    #   emmet-core
     #   maggma
     #   matplotlib
     #   monty
     #   pandas
     #   pymatgen
     #   scipy
     #   spglib
-orjson==3.10.12
-    # via maggma
-packaging==24.2
+orjson==3.10.18
+    # via
+    #   maggma
+    #   pymatgen
+packaging==25.0
     # via
     #   matplotlib
     #   mongomock
     #   plotly
 palettable==3.3.3
     # via pymatgen
-pandas==2.2.3
+pandas==2.3.0
     # via
     #   maggma
     #   pymatgen
-paramiko==3.5.0
+paramiko==3.5.1
     # via sshtunnel
-pillow==11.0.0
+pillow==11.2.1
     # via matplotlib
-plotly==5.24.1
+plotly==6.1.2
     # via pymatgen
 pybtex==0.24.0
-    # via
-    #   emmet-core
-    #   pymatgen
+    # via emmet-core
 pycparser==2.22
     # via cffi
-pydantic==2.10.3
+pydantic==2.11.5
     # via
     #   emmet-core
     #   maggma
     #   pydantic-settings
-pydantic-core==2.27.1
+pydantic-core==2.33.2
     # via pydantic
-pydantic-settings==2.6.1
+pydantic-settings==2.9.1
     # via
     #   emmet-core
     #   maggma
-pydash==8.0.4
+pydash==8.0.5
     # via maggma
-pymatgen==2024.11.13
+pymatgen==2025.5.28
     # via
     #   emmet-core
     #   mp-api (pyproject.toml)
 pymongo==4.10.1
     # via maggma
 pynacl==1.5.0
     # via paramiko
-pyparsing==3.2.0
-    # via matplotlib
+pyparsing==3.2.3
+    # via
+    #   bibtexparser
+    #   matplotlib
 python-dateutil==2.9.0.post0
     # via
     #   botocore
     #   maggma
     #   matplotlib
     #   pandas
-python-dotenv==1.0.1
+python-dotenv==1.1.0
     # via pydantic-settings
-pytz==2024.2
+pytz==2025.2
     # via
     #   mongomock
     #   pandas
 pyyaml==6.0.2
     # via pybtex
-pyzmq==26.2.0
+pyzmq==26.4.0
     # via maggma
-referencing==0.35.1
+referencing==0.36.2
     # via
     #   jsonschema
     #   jsonschema-specifications
 requests==2.32.3
     # via
     #   mp-api (pyproject.toml)
     #   pymatgen
-rpds-py==0.22.3
+rpds-py==0.25.1
     # via
     #   jsonschema
     #   referencing
-ruamel-yaml==0.18.6
+ruamel-yaml==0.18.12
     # via
     #   maggma
     #   monty
     #   pymatgen
 ruamel-yaml-clib==0.2.12
     # via ruamel-yaml
-s3transfer==0.10.4
+s3transfer==0.13.0
     # via boto3
-scipy==1.14.1
+scipy==1.15.3
     # via pymatgen
 sentinels==1.0.0
     # via mongomock
 six==1.17.0
     # via
     #   pybtex
     #   python-dateutil
-smart-open==7.0.5
+smart-open==7.1.0
     # via mp-api (pyproject.toml)
-spglib==2.5.0
+spglib==2.6.0
     # via pymatgen
 sshtunnel==0.4.0
     # via maggma
-sympy==1.13.3
+sympy==1.14.0
     # via pymatgen
 tabulate==0.9.0
     # via pymatgen
-tenacity==9.0.0
-    # via plotly
 tqdm==4.67.1
     # via
     #   maggma
     #   pymatgen
-typing-extensions==4.12.2
+typing-extensions==4.14.0
     # via
     #   emmet-core
     #   mp-api (pyproject.toml)
     #   pydantic
     #   pydantic-core
     #   pydash
-tzdata==2024.2
+    #   referencing
+    #   spglib
+    #   typing-inspection
+typing-inspection==0.4.1
+    # via
+    #   pydantic
+    #   pydantic-settings
+tzdata==2025.2
     # via pandas
-uncertainties==3.2.2
+uncertainties==3.2.3
     # via pymatgen
-urllib3==2.2.3
+urllib3==2.4.0
     # via
     #   botocore
     #   requests
-wrapt==1.17.0
+wrapt==1.17.2
     # via smart-open
 
 # The following packages are considered to be unsafe in a requirements file: