upgrade deps

Author: esoteric-ephemera

requirements/requirements-ubuntu-latest_py3.11.txt

@@ -12,9 +12,9 @@ bibtexparser==1.4.4
     # via pymatgen-core
 blake3==1.0.8
     # via emmet-core
-boto3==1.42.94
+boto3==1.43.4
     # via mp-api (pyproject.toml)
-botocore==1.42.94
+botocore==1.43.4
     # via
     #   boto3
     #   s3transfer
@@ -30,7 +30,7 @@ deltalake==1.5.1
     # via mp-api (pyproject.toml)
 deprecated==1.3.1
     # via deltalake
-emmet-core==0.86.4rc2
+emmet-core==0.86.4
     # via mp-api (pyproject.toml)
 fonttools==4.62.1
     # via matplotlib
@@ -50,7 +50,7 @@ latexcodec==3.0.1
     # via pybtex
 lxml==6.1.0
     # via pymatgen-core
-matplotlib==3.10.8
+matplotlib==3.10.9
     # via pymatgen-core
 monty==2026.2.18
     # via
@@ -75,11 +75,11 @@ numpy==2.4.4
     #   pymatgen-io-validation
     #   scipy
     #   spglib
-orjson==3.11.8
+orjson==3.11.9
     # via
     #   mp-api (pyproject.toml)
     #   pymatgen-core
-packaging==26.1
+packaging==26.2
     # via
     #   matplotlib
     #   plotly
@@ -97,18 +97,18 @@ pyarrow==24.0.0
     # via mp-api (pyproject.toml)
 pybtex==0.26.1
     # via emmet-core
-pydantic==2.13.3
+pydantic==2.13.4
     # via
     #   emmet-core
     #   pydantic-settings
     #   pymatgen-io-validation
-pydantic-core==2.46.3
+pydantic-core==2.46.4
     # via pydantic
 pydantic-settings==2.14.0
     # via
     #   emmet-core
     #   pymatgen-io-validation
-pymatgen==2026.3.23
+pymatgen==2026.5.4
     # via
     #   emmet-core
     #   mp-api (pyproject.toml)
@@ -137,7 +137,7 @@ requests==2.33.1
     #   pymatgen-io-validation
 ruamel-yaml==0.19.1
     # via monty
-s3transfer==0.16.1
+s3transfer==0.17.0
     # via boto3
 scipy==1.17.1
     # via pymatgen-core

requirements/requirements-ubuntu-latest_py3.11_extras.txt

@@ -31,7 +31,7 @@ attrs==26.1.0
     #   cyclopts
     #   jsonschema
     #   referencing
-authlib==1.7.0
+authlib==1.7.2
     # via fastmcp
 babel==2.18.0
     # via sphinx
@@ -46,18 +46,18 @@ blake3==1.0.8
 blinker==1.9.0
     # via flask
 boltons==25.0.0
-    # via mpcontribs-client
-boto3==1.42.94
     # via mp-api (pyproject.toml)
-botocore==1.42.94
+boto3==1.43.4
+    # via mp-api (pyproject.toml)
+botocore==1.43.4
     # via
     #   boto3
     #   s3transfer
 bravado==12.0.1
-    # via mpcontribs-client
+    # via mp-api (pyproject.toml)
 bravado-core==6.3.1
     # via bravado
-cachetools==7.0.6
+cachetools==7.1.1
     # via
     #   mp-api (pyproject.toml)
     #   py-key-value-aio
@@ -82,7 +82,7 @@ contourpy==1.3.3
     # via matplotlib
 coverage[toml]==7.13.5
     # via pytest-cov
-cryptography==46.0.7
+cryptography==48.0.0
     # via
     #   authlib
     #   joserfc
@@ -92,7 +92,7 @@ custodian==2025.12.14
     # via mp-api (pyproject.toml)
 cycler==0.12.1
     # via matplotlib
-cyclopts==4.11.0
+cyclopts==4.11.2
     # via fastmcp
 decorator==5.2.1
     # via ipython
@@ -115,7 +115,7 @@ docutils==0.22.4
     #   sphinx
 email-validator==2.3.0
     # via pydantic
-emmet-core[all]==0.86.4rc2
+emmet-core[all]==0.86.4
     # via mp-api (pyproject.toml)
 exceptiongroup==1.3.1
     # via fastmcp
@@ -180,7 +180,7 @@ inflect==7.5.0
     # via emmet-core
 iniconfig==2.3.0
     # via pytest
-ipython==9.10.1
+ipython==9.13.0
     # via mp-api (pyproject.toml)
 ipython-pygments-lexers==1.1.1
     # via ipython
@@ -194,7 +194,7 @@ jaraco-context==6.1.2
     # via keyring
 jaraco-functools==4.4.0
     # via keyring
-jedi==0.19.2
+jedi==0.20.0
     # via ipython
 jeepney==0.9.0
     # via
@@ -212,7 +212,7 @@ joblib==1.5.3
     # via
     #   pymatgen-analysis-diffusion
     #   pymatgen-core
-joserfc==1.6.4
+joserfc==1.6.5
     # via authlib
 json2html==1.3.0
     # via mp-api (pyproject.toml)
@@ -227,7 +227,7 @@ jsonschema[format-nongpl]==4.26.0
     #   bravado-core
     #   mcp
     #   swagger-spec-validator
-jsonschema-path==0.4.5
+jsonschema-path==0.4.6
     # via fastmcp
 jsonschema-specifications==2025.9.1
     # via jsonschema
@@ -241,7 +241,7 @@ latexcodec==3.0.1
     # via pybtex
 lazy-loader==0.5
     # via scikit-image
-librt==0.9.0
+librt==0.10.0
     # via mypy
 lxml==6.1.0
     # via pymatgen-core
@@ -252,7 +252,7 @@ markupsafe==3.0.3
     #   flask
     #   jinja2
     #   werkzeug
-matplotlib==3.10.8
+matplotlib==3.10.9
     # via
     #   ase
     #   pymatgen-core
@@ -321,13 +321,13 @@ numpy==2.4.4
     #   tifffile
 openapi-pydantic==0.5.1
     # via fastmcp
-opentelemetry-api==1.41.0
+opentelemetry-api==1.41.1
     # via fastmcp
-orjson==3.11.8
+orjson==3.11.9
     # via
     #   mp-api (pyproject.toml)
     #   pymatgen-core
-packaging==26.1
+packaging==26.2
     # via
     #   fastmcp
     #   lazy-loader
@@ -342,11 +342,11 @@ pandas==3.0.2
     # via
     #   pymatgen-core
     #   seaborn
-parso==0.8.6
+parso==0.8.7
     # via jedi
 pathable==0.5.0
     # via jsonschema-path
-pathspec==1.1.0
+pathspec==1.1.1
     # via mypy
 pexpect==4.9.0
     # via ipython
@@ -374,7 +374,9 @@ pre-commit==4.6.0
 prompt-toolkit==3.0.52
     # via ipython
 psutil==7.2.2
-    # via custodian
+    # via
+    #   custodian
+    #   ipython
 ptyprocess==0.7.0
     # via pexpect
 pubchempy==1.0.5
@@ -395,15 +397,15 @@ pycodestyle==2.14.0
     #   mp-api (pyproject.toml)
 pycparser==3.0
     # via cffi
-pydantic[email]==2.13.3
+pydantic[email]==2.13.4
     # via
     #   emmet-core
     #   fastmcp
     #   mcp
     #   openapi-pydantic
     #   pydantic-settings
     #   pymatgen-io-validation
-pydantic-core==2.46.3
+pydantic-core==2.46.4
     # via pydantic
 pydantic-settings==2.14.0
     # via
@@ -423,7 +425,7 @@ pyisemail==2.0.1
     # via mp-api (pyproject.toml)
 pyjwt[crypto]==2.12.1
     # via mcp
-pymatgen==2026.3.23
+pymatgen==2026.5.4
     # via
     #   emmet-core
     #   mp-api (pyproject.toml)
@@ -432,7 +434,7 @@ pymatgen==2026.3.23
     #   pymatgen-analysis-defects
     #   pymatgen-analysis-diffusion
     #   pymatgen-io-validation
-pymatgen-analysis-alloys==0.0.8
+pymatgen-analysis-alloys==0.0.9
     # via emmet-core
 pymatgen-analysis-defects==2026.3.20
     # via emmet-core
@@ -443,9 +445,7 @@ pymatgen-core==2026.4.16
 pymatgen-io-validation==0.1.2
     # via emmet-core
 pymongo==4.17.0
-    # via
-    #   emmet-core
-    #   mpcontribs-client
+    # via emmet-core
 pyparsing==3.3.2
     # via
     #   bibtexparser
@@ -475,15 +475,15 @@ python-dateutil==2.9.0.post0
     #   bravado-core
     #   matplotlib
     #   pandas
-python-discovery==1.2.2
+python-discovery==1.3.0
     # via virtualenv
 python-dotenv==1.2.2
     # via
     #   fastmcp
     #   pydantic-settings
-python-multipart==0.0.26
+python-multipart==0.0.27
     # via mcp
-pytz==2026.1.post1
+pytz==2026.2
     # via bravado-core
 pyyaml==6.0.3
     # via
@@ -533,7 +533,7 @@ ruamel-yaml==0.19.1
     # via
     #   custodian
     #   monty
-s3transfer==0.16.1
+s3transfer==0.17.0
     # via boto3
 scikit-image==0.26.0
     # via pymatgen-analysis-defects
@@ -550,7 +550,7 @@ seekpath==2.2.1
     # via emmet-core
 shapely==2.1.2
     # via pymatgen-analysis-alloys
-simplejson==4.1.0
+simplejson==4.1.1
     # via
     #   bravado
     #   bravado-core
@@ -580,7 +580,7 @@ sphinxcontrib-qthelp==2.0.0
     # via sphinx
 sphinxcontrib-serializinghtml==2.0.0
     # via sphinx
-sse-starlette==3.3.4
+sse-starlette==3.4.1
     # via mcp
 stack-data==0.6.3
     # via ipython
@@ -600,13 +600,13 @@ tifffile==2026.3.3
     # via scikit-image
 tqdm==4.67.3
     # via pymatgen-core
-traitlets==5.14.3
+traitlets==5.15.0
     # via
     #   ipython
     #   matplotlib-inline
 typeguard==4.5.1
     # via inflect
-types-requests==2.33.0.20260408
+types-requests==2.33.0.20260503
     # via
     #   mp-api (pyproject.toml)
     #   types-tqdm
@@ -645,9 +645,9 @@ typing-inspection==0.4.2
     #   mcp
     #   pydantic
     #   pydantic-settings
-tzdata==2026.1
+tzdata==2026.2
     # via arrow
-uncalled-for==0.3.1
+uncalled-for==0.3.2
     # via fastmcp
 uncertainties==3.2.3
     # via pymatgen-core
@@ -662,11 +662,11 @@ uvicorn==0.46.0
     # via
     #   fastmcp
     #   mcp
-virtualenv==21.2.4
+virtualenv==21.3.1
     # via pre-commit
 watchfiles==1.1.1
     # via fastmcp
-wcwidth==0.6.0
+wcwidth==0.7.0
     # via prompt-toolkit
 webcolors==25.10.0
     # via jsonschema