Automated dependency upgrades (#1000)

Co-authored-by: github-actions <github-actions@github.com>

Author: munrojm

requirements/requirements-ubuntu-latest_py3.11.txt

@@ -17,55 +17,57 @@ bcrypt==4.3.0
     # via paramiko
 bibtexparser==1.4.3
     # via pymatgen
-boto3==1.38.37
+boto3==1.40.29
     # via maggma
-botocore==1.38.37
+botocore==1.40.29
     # via
     #   boto3
     #   s3transfer
-certifi==2025.6.15
+certifi==2025.8.3
     # via requests
-cffi==1.17.1
+cffi==2.0.0
     # via
     #   cryptography
     #   pynacl
-charset-normalizer==3.4.2
+charset-normalizer==3.4.3
     # via requests
-contourpy==1.3.2
+contourpy==1.3.3
     # via matplotlib
-cryptography==45.0.4
+cryptography==45.0.7
     # via paramiko
 cycler==0.12.1
     # via matplotlib
-dnspython==2.7.0
+dnspython==2.8.0
     # via
     #   maggma
     #   pymongo
-emmet-core==0.84.8
+emmet-core==0.84.10rc2
     # via mp-api (pyproject.toml)
-fonttools==4.58.4
+fonttools==4.59.2
     # via matplotlib
 idna==3.10
     # via requests
+invoke==2.2.0
+    # via paramiko
 jmespath==1.0.1
     # via
     #   boto3
     #   botocore
-joblib==1.5.1
+joblib==1.5.2
     # via pymatgen
 jsonlines==4.0.0
     # via maggma
-jsonschema==4.24.0
+jsonschema==4.25.1
     # via maggma
-jsonschema-specifications==2025.4.1
+jsonschema-specifications==2025.9.1
     # via jsonschema
-kiwisolver==1.4.8
+kiwisolver==1.4.9
     # via matplotlib
-latexcodec==3.0.0
+latexcodec==3.0.1
     # via pybtex
-maggma==0.71.5
+maggma==0.72.0
     # via mp-api (pyproject.toml)
-matplotlib==3.10.3
+matplotlib==3.10.6
     # via pymatgen
 mongomock==4.3.0
     # via maggma
@@ -81,21 +83,22 @@ msgpack==1.1.1
     # via
     #   maggma
     #   mp-api (pyproject.toml)
-narwhals==1.43.0
+narwhals==2.4.0
     # via plotly
 networkx==3.5
     # via pymatgen
-numpy==2.3.0
+numpy==2.3.3
     # via
     #   contourpy
     #   maggma
     #   matplotlib
     #   monty
     #   pandas
     #   pymatgen
+    #   pymatgen-io-validation
     #   scipy
     #   spglib
-orjson==3.10.18
+orjson==3.11.3
     # via
     #   maggma
     #   pymatgen
@@ -106,40 +109,45 @@ packaging==25.0
     #   plotly
 palettable==3.3.3
     # via pymatgen
-pandas==2.3.0
+pandas==2.3.2
     # via
     #   maggma
     #   pymatgen
-paramiko==3.5.1
+paramiko==4.0.0
     # via sshtunnel
-pillow==11.2.1
+pillow==11.3.0
     # via matplotlib
-plotly==6.1.2
+plotly==6.3.0
     # via pymatgen
-pybtex==0.24.0
+pybtex==0.25.1
     # via emmet-core
-pycparser==2.22
+pycparser==2.23
     # via cffi
 pydantic==2.11.7
     # via
     #   emmet-core
     #   maggma
     #   pydantic-settings
+    #   pymatgen-io-validation
 pydantic-core==2.33.2
     # via pydantic
-pydantic-settings==2.9.1
+pydantic-settings==2.10.1
     # via
     #   emmet-core
     #   maggma
+    #   pymatgen-io-validation
 pydash==8.0.5
     # via maggma
 pymatgen==2025.6.14
     # via
     #   emmet-core
     #   mp-api (pyproject.toml)
+    #   pymatgen-io-validation
+pymatgen-io-validation==0.1.1
+    # via emmet-core
 pymongo==4.10.1
     # via maggma
-pynacl==1.5.0
+pynacl==1.6.0
     # via paramiko
 pyparsing==3.2.3
     # via
@@ -151,46 +159,45 @@ python-dateutil==2.9.0.post0
     #   maggma
     #   matplotlib
     #   pandas
-python-dotenv==1.1.0
+python-dotenv==1.1.1
     # via pydantic-settings
 pytz==2025.2
     # via
     #   mongomock
     #   pandas
 pyyaml==6.0.2
     # via pybtex
-pyzmq==27.0.0
+pyzmq==27.1.0
     # via maggma
 referencing==0.36.2
     # via
     #   jsonschema
     #   jsonschema-specifications
-requests==2.32.4
+requests==2.32.5
     # via
     #   mp-api (pyproject.toml)
     #   pymatgen
-rpds-py==0.25.1
+    #   pymatgen-io-validation
+rpds-py==0.27.1
     # via
     #   jsonschema
     #   referencing
-ruamel-yaml==0.18.14
+ruamel-yaml==0.18.15
     # via
     #   maggma
     #   monty
     #   pymatgen
 ruamel-yaml-clib==0.2.12
     # via ruamel-yaml
-s3transfer==0.13.0
+s3transfer==0.14.0
     # via boto3
-scipy==1.15.3
+scipy==1.16.2
     # via pymatgen
-sentinels==1.0.0
+sentinels==1.1.1
     # via mongomock
 six==1.17.0
-    # via
-    #   pybtex
-    #   python-dateutil
-smart-open==7.1.0
+    # via python-dateutil
+smart-open==7.3.1
     # via mp-api (pyproject.toml)
 spglib==2.6.0
     # via pymatgen
@@ -204,7 +211,7 @@ tqdm==4.67.1
     # via
     #   maggma
     #   pymatgen
-typing-extensions==4.14.0
+typing-extensions==4.15.0
     # via
     #   emmet-core
     #   mp-api (pyproject.toml)
@@ -222,11 +229,11 @@ tzdata==2025.2
     # via pandas
 uncertainties==3.2.3
     # via pymatgen
-urllib3==2.4.0
+urllib3==2.5.0
     # via
     #   botocore
     #   requests
-wrapt==1.17.2
+wrapt==1.17.3
     # via smart-open
 
 # The following packages are considered to be unsafe in a requirements file: