update dependencies for ubuntu-latest/py3.12

Author: github-actions

requirements/ubuntu-latest_py3.12.txt

@@ -12,13 +12,13 @@ aiosqlite==0.21.0
     # via ypy-websocket
 annotated-types==0.7.0
     # via pydantic
-anyio==4.9.0
+anyio==4.10.0
     # via jupyter-server
 argon2-cffi==25.1.0
     # via
     #   jupyter-server
     #   notebook
-argon2-cffi-bindings==21.2.0
+argon2-cffi-bindings==25.1.0
     # via argon2-cffi
 arrow==1.3.0
     # via isoduration
@@ -41,40 +41,40 @@ bleach[css]==6.2.0
     # via nbconvert
 blinker==1.9.0
     # via flask
-boto3==1.39.14
+boto3==1.40.6
     # via maggma
-botocore==1.39.14
+botocore==1.40.6
     # via
     #   boto3
     #   s3transfer
 cachelib==0.13.0
     # via flask-caching
-certifi==2025.7.14
+certifi==2025.8.3
     # via requests
 cffi==1.17.1
     # via
     #   argon2-cffi-bindings
     #   cryptography
     #   pynacl
-charset-normalizer==3.4.2
+charset-normalizer==3.4.3
     # via requests
 click==8.2.1
     # via flask
 comm==0.2.3
     # via ipykernel
 contourpy==1.3.3
     # via matplotlib
-cryptography==45.0.5
+cryptography==45.0.6
     # via paramiko
 crystaltoolkit-extension==0.6.0
     # via crystal_toolkit (pyproject.toml)
 cycler==0.12.1
     # via matplotlib
-dash==3.1.1
+dash==3.2.0
     # via crystal_toolkit (pyproject.toml)
 dash-mp-components==0.4.47
     # via crystal_toolkit (pyproject.toml)
-debugpy==1.8.15
+debugpy==1.8.16
     # via ipykernel
 decorator==5.2.1
     # via ipython
@@ -84,7 +84,7 @@ dnspython==2.7.0
     # via
     #   maggma
     #   pymongo
-emmet-core==0.84.9rc0
+emmet-core==0.84.9
     # via mp-api
 entrypoints==0.4
     # via jupyter-client
@@ -113,6 +113,8 @@ imageio==2.37.0
     # via scikit-image
 importlib-metadata==8.7.0
     # via dash
+invoke==2.2.0
+    # via paramiko
 ipykernel==6.29.5
     # via
     #   nbclassic
@@ -205,7 +207,7 @@ jupyterlab-pygments==0.3.0
     # via nbconvert
 jupyterlab-server==2.27.3
     # via jupyterlab
-kiwisolver==1.4.8
+kiwisolver==1.4.9
     # via matplotlib
 lark==1.2.2
     # via rfc3987-syntax
@@ -221,7 +223,7 @@ markupsafe==3.0.2
     #   jinja2
     #   nbconvert
     #   werkzeug
-matplotlib==3.10.3
+matplotlib==3.10.5
     # via pymatgen
 matplotlib-inline==0.1.7
     # via
@@ -237,15 +239,15 @@ monty==2025.3.3
     #   maggma
     #   mp-api
     #   pymatgen
-mp-api==0.45.7
+mp-api==0.45.8
     # via crystal_toolkit (pyproject.toml)
 mpmath==1.3.0
     # via sympy
 msgpack==1.1.1
     # via
     #   maggma
     #   mp-api
-narwhals==2.0.0
+narwhals==2.0.1
     # via plotly
 nbclassic==1.3.1
     # via
@@ -320,7 +322,7 @@ pandas==2.3.1
     #   pymatgen
 pandocfilters==1.5.1
     # via nbconvert
-paramiko==3.5.1
+paramiko==4.0.0
     # via sshtunnel
 parso==0.8.4
     # via jedi
@@ -407,7 +409,7 @@ pyyaml==6.0.2
     # via
     #   jupyter-events
     #   pybtex
-pyzmq==27.0.0
+pyzmq==27.0.1
     # via
     #   ipykernel
     #   jupyter-client
@@ -425,7 +427,7 @@ requests==2.32.4
     #   jupyterlab-server
     #   mp-api
     #   pymatgen
-retrying==1.4.1
+retrying==1.4.2
     # via dash
 rfc3339-validator==0.1.4
     # via
@@ -437,7 +439,7 @@ rfc3986-validator==0.1.1
     #   jupyter-events
 rfc3987-syntax==1.1.0
     # via jsonschema
-rpds-py==0.26.0
+rpds-py==0.27.0
     # via
     #   jsonschema
     #   referencing
@@ -498,7 +500,7 @@ tifffile==2025.6.11
     # via scikit-image
 tinycss2==1.4.0
     # via bleach
-tornado==6.5.1
+tornado==6.5.2
     # via
     #   ipykernel
     #   jupyter-client
@@ -523,7 +525,7 @@ traitlets==5.14.3
     #   nbconvert
     #   nbformat
     #   notebook
-types-python-dateutil==2.9.0.20250708
+types-python-dateutil==2.9.0.20250809
     # via arrow
 typing-extensions==4.14.1
     # via