Merge pull request ITHACA-FV#610 from giovastabile/update_submodules

ENH: adding new workflow for OF2412 with dockerfile

Author: giovastabile

.compileOF2412.sh

@@ -0,0 +1,4 @@
+#!/bin/bash
+docker pull ithacafv/openfoam2412-muq2-pytorch
+docker run -ti -d --name foam2412 -v "${PWD}":/home/ofuser/app:rw ithacafv/openfoam2412-muq2-pytorch /bin/bash
+docker exec foam2412 /bin/bash -c "source /usr/lib/openfoam/openfoam2412/etc/bashrc; cd /home/ofuser/app; source etc/bashrc; git submodule update --init; ./Allwmake -taumq"

.github/workflows/of2412.yml

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+name: OF2412
+
+on:
+  push:
+    branches: [ master ]
+  pull_request:
+    branches: [ master ]
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+    
+    strategy:
+      matrix:
+        include:
+          - name: "OpenFOAM 2412"
+            install: "cd ."
+            compile: ./.compileOF2412.sh
+
+    steps:
+    - name: Checkout
+      uses: actions/checkout@v1
+    - name: install OF
+      run: ${{ matrix.install}}
+    - name: make
+      run: ${{ matrix.compile}}

dockerfiles/OF2412/Dockerfile

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+# Start from the ubuntu Openfoam 2106 image
+FROM opencfd/openfoam-dev:2412
+USER root
+ARG PYTHON_VERSION=3.7
+ENV PATH="/root/miniconda3/bin:${PATH}"
+
+RUN rm /etc/apt/sources.list.d/openfoam.list && \
+    cp /etc/apt/sources.list /etc/apt/sources.list.backup && \
+    grep -v -e "openfoam" /etc/apt/sources.list.backup > /etc/apt/sources.list && \
+    echo 'debconf debconf/frontend select Noninteractive' | debconf-set-selections && \
+    apt-get update && \
+    apt-get install -yy -q pwgen npm nodejs cmake git wget bzip2 unzip && \
+    apt-get clean && rm -rf /var/lib/apt/lists/* /tmp/* /var/tmp/*
+
+# Anaconda installing
+RUN wget https://repo.anaconda.com/miniconda/Miniconda3-latest-Linux-x86_64.sh && \
+bash Miniconda3-latest-Linux-x86_64.sh -b && \
+rm Miniconda3-latest-Linux-x86_64.sh && \
+. /root/miniconda3/etc/profile.d/conda.sh && \  
+export PATH=/root/miniconda3/bin:$PATH && \
+wget https://download.pytorch.org/libtorch/cpu/libtorch-cxx11-abi-shared-with-deps-2.7.1%2Bcpu.zip && \
+unzip libtorch-cxx11-abi-shared-with-deps-2.7.1+cpu.zip && \
+rm libtorch-cxx11-abi-shared-with-deps-2.7.1+cpu.zip && \
+conda tos accept --override-channels --channel https://repo.anaconda.com/pkgs/main && \
+conda tos accept --override-channels --channel  https://repo.anaconda.com/pkgs/r && \
+conda install -y -c conda-forge muq cmake && \
+conda clean -y --all
+ENV TORCH_LIBRARIES=/libtorch
+ENV MUQ_LIBRARIES=/root/miniconda3
+RUN echo 'source /usr/lib/openfoam/openfoam2412/etc/bashrc' >> ~/.bashrc 
+

dockerfiles/OF2412/Makefile

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+ME=$(shell whoami)
+clean:
+	rm -f hello
+
+build:
+	docker build --build-arg myuser=$(shell whoami) --build-arg UID=$(id -u) --build-arg GID=$(id -g) -t ithacafv/openfoam2412 -f ./Dockerfile .
+
+run: build
+	xhost +"local:docker" && \
+	docker run -ti --rm \
+        -v "${HOME}:/home/${ME}" \
+		-e DISPLAY=${DISPLAY} \
+        --security-opt seccomp=unconfined \
+		ubuntu-apc
+
+