Merge pull request ITHACA-FV#617 from giovastabile/update_submodules

FIX: fixed dockerfiles for ithaca amd

Author: giovastabile

dockerfiles/amd64/Dockerfile

@@ -2,25 +2,25 @@ FROM  ithacafv/openfoam2506-muq2-pytorch
 LABEL maintainer="giovannistabile@santannapisa.it"
 
 
-# add enviromental variables and enable the default user
-ARG USER=ithacafv
-ARG of_var="source /usr/lib/openfoam/openfoam2506/etc/bashrc"
+# # add enviromental variables and enable the default user
+# ARG USER=ithacafv
+# ARG of_var="source /usr/lib/openfoam/openfoam2506/etc/bashrc"
 ARG ithaca_var="source /usr/lib/ITHACA-FV/etc/bashrc"
-ENV USER=$USER
-
-# Create the user
-RUN adduser --disabled-password --gecos '' $USER && \
-    adduser $USER sudo; echo '%sudo ALL=(ALL) NOPASSWD:ALL' >> /etc/sudoers && \
-    usermod -a -G $USER $USER && \
-    usermod -u 9999 ithacafv  && \
-    groupmod -g 9999 ithacafv
-#make sure everything is in place
-ENV HOME /home/$USER
-RUN chown -R $USER:$USER /home/$USER
-RUN chown -R $USER:$USER /home/openfoam && rm -r /home/openfoam && \
-    chown -R $USER:$USER /home/sudofoam && rm -r /home/sudofoam
-
-USER root
+# ENV USER=$USER
+
+# # Create the user
+# RUN adduser --disabled-password --gecos '' $USER && \
+#     adduser $USER sudo; echo '%sudo ALL=(ALL) NOPASSWD:ALL' >> /etc/sudoers && \
+#     usermod -a -G $USER $USER && \
+#     usermod -u 9999 ithacafv  && \
+#     groupmod -g 9999 ithacafv
+# #make sure everything is in place
+# ENV HOME /home/$USER
+# RUN chown -R $USER:$USER /home/$USER
+# RUN chown -R $USER:$USER /home/openfoam && rm -r /home/openfoam && \
+#     chown -R $USER:$USER /home/sudofoam && rm -r /home/sudofoam
+
+# USER root
 RUN apt-get update &&\
     apt-get install -y \
         git \
@@ -33,27 +33,28 @@ RUN apt-get update &&\
 
 WORKDIR /usr/lib
 RUN git clone https://github.com/ITHACA-FV/ITHACA-FV.git
-RUN chown -R $USER:$USER openfoam ITHACA-FV
-RUN chown -R $USER:$USER /home/$USER
-USER $USER
+# RUN chown -R $USER:$USER openfoam ITHACA-FV
+# RUN chown -R $USER:$USER /home/$USER
+# RUN chown -R $USER:$USER /root/miniconda3/include
+# USER $USER
 
 RUN /bin/bash -c "source /usr/lib/openfoam/openfoam2506/etc/bashrc && \
-    cd ITHACA-FV && git submodule update --init && source /etc/bash.bashrc && \
+    cd ITHACA-FV && git submodule update --init && source etc/bashrc && \
     ./Allwmake -taumq -j 4";
 
-USER root
-RUN 	cp -r /home/ithacafv/OpenFOAM/ithacafv-v2506/platforms/linux64GccDPInt32Opt/bin/* /bin/
-RUN 	cp -r /home/ithacafv/OpenFOAM/ithacafv-v2506/platforms/linux64GccDPInt32Opt/lib/* /lib/
+# USER root
+# RUN 	cp -r /home/ithacafv/OpenFOAM/ithacafv-v2506/platforms/linux64GccDPInt32Opt/bin/* /bin/
+# RUN 	cp -r /home/ithacafv/OpenFOAM/ithacafv-v2506/platforms/linux64GccDPInt32Opt/lib/* /lib/
 
 #Update bashrc 
-RUN  echo $of_var >> /etc/bash.bashrc
-RUN  echo $ithaca_var >> /etc/bash.bashrc
+# RUN  echo $of_var >> /etc/bash.bashrc
+RUN  echo $ithaca_var >> /root/.bashrc
 
-#Source bashrc
-USER $USER
-RUN /bin/bash -c "source /etc/bash.bashrc"
+# #Source bashrc
+# USER $USER
+# RUN /bin/bash -c "source /etc/bash.bashrc"
 
-USER $USER
-WORKDIR $HOME
-ENTRYPOINT ["/bin/bash"]
+# USER $USER
+# WORKDIR $HOME
+# ENTRYPOINT ["/bin/bash"]